miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AM481354.2/2056-2230 29760:Vitis vinifera
          Length = 175

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 6   tcatatttttccacggctttcttgaacttc 35
           ||||||||| ||||||||||||||||||||
Sbjct: 172 tcatattttcccacggctttcttgaacttc 143



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttccacggctttcttgaactt 34
          |||||||||||||||||||||||
Sbjct: 9  ttttccacggctttcttgaactt 31



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 82  tacgaagctcaagaaagccgtgggaa 107
           ||||||| ||||||||||||||||||
Sbjct: 140 tacgaagttcaagaaagccgtgggaa 165




>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
          Length = 87

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 5  ctcatatttttccacggctttcttgaactt 34
          ||||||||||||||| ||||||||||||||
Sbjct: 2  ctcatatttttccacagctttcttgaactt 31




>RF00648;MIR396;AARH01003359.1/52522-52352 3694:Populus
          trichocarpa
          Length = 171

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttccacggctttcttgaactt 34
          |||||||||||||||||||||||
Sbjct: 9  ttttccacggctttcttgaactt 31



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 86  aagctcaagaaagccgtgggaa 107
           ||||||||||||||||||||||
Sbjct: 140 aagctcaagaaagccgtgggaa 161




>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
          Length = 108

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 85  gaagctcaagaaagccgtgggaa 107
           |||||||||||||||||||||||
Sbjct: 76  gaagctcaagaaagccgtgggaa 98




>RF00648;MIR396;FJ647794.1/154-54 64478:Actinidia arguta
          Length = 101

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 8  atatttttccacggctttcttgaactt 34
          |||||||||||||| ||||||||||||
Sbjct: 5  atatttttccacggttttcttgaactt 31




>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
          (papaya)
          Length = 159

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 6  tcatatttttccacggctttcttgaacttc 35
          |||| ||||||||| |||||||||||||||
Sbjct: 3  tcatgtttttccacagctttcttgaacttc 32




>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
          trichocarpa
          Length = 105

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 ttccacggctttcttgaacttc 35
          ||||||||||||||||||||||
Sbjct: 11 ttccacggctttcttgaacttc 32



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                    
Query: 11 tttttccacggctttcttgaacttcc 36
          ||||||||| ||||||||||||||||
Sbjct: 97 tttttccacagctttcttgaacttcc 72




>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus trichocarpa
          Length = 157

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 85  gaagctcaagaaagccgtggga 106
           ||||||||||||||||||||||
Sbjct: 125 gaagctcaagaaagccgtggga 146




>RF00648;MIR396;AARH01003151.1/856908-856779 3694:Populus
          trichocarpa
          Length = 130

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 ttttccacggctttcttgaact 33
          ||||||||||||||||||||||
Sbjct: 9  ttttccacggctttcttgaact 30




>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
          Length = 261

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 6  tcatatttttccacggctttcttgaacttc 35
          |||| ||||||||| |||||||||||||||
Sbjct: 3  tcatgtttttccacagctttcttgaacttc 32