miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
          Length = 87

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 18 gtgtgcctggctccctgtatgccaca 43
          ||||||||||||||||||||||||||
Sbjct: 1  gtgtgcctggctccctgtatgccaca 26




>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
          (sorghum)
          Length = 90

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 18 gtgtgcctggctccctgtatgccaca 43
          ||||||||||||||||||||||||||
Sbjct: 1  gtgtgcctggctccctgtatgccaca 26




>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
          Indica Group
          Length = 88

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 18 gtgtgcctggctccctgtatgccaca 43
          ||||||||||||||||||||||||||
Sbjct: 1  gtgtgcctggctccctgtatgccaca 26




>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
          Length = 90

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 tgtgcctggctccctgtatgccaca 43
          |||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccaca 26




>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
          burmannicoides
          Length = 87

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 tgtgcctggctccctgtatgccaca 43
          |||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccaca 26




>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
          (thale cress)
          Length = 87

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 20 gtgcctggctccctgtatgccaca 43
          ||||||||||||||||||||||||
Sbjct: 3  gtgcctggctccctgtatgccaca 26




>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
          (castor bean)
          Length = 86

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 18 gtgtgcctggctccctgtatgcca 41
          ||||||||||||||||||||||||
Sbjct: 1  gtgtgcctggctccctgtatgcca 24




>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
          (barrel medic)
          Length = 86

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 18 gtgtgcctggctccctgtatgcca 41
          ||||||||||||||||||||||||
Sbjct: 1  gtgtgcctggctccctgtatgcca 24




>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
          Length = 92

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 20 gtgcctggctccctgtatgccaca 43
          ||||||||||||||||||||||||
Sbjct: 3  gtgcctggctccctgtatgccaca 26




>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
          (sorghum)
          Length = 89

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgtgcctggctccctgtatgccac 42
          ||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccac 25




>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
          Length = 96

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgtgcctggctccctgtatgccac 42
          ||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccac 25




>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
          Indica Group
          Length = 93

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgtgcctggctccctgtatgccac 42
          ||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccac 25




>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
          Length = 90

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgtgcctggctccctgtatgccac 42
          ||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccac 25




>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
          (papaya)
          Length = 85

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgtgcctggctccctgtatgcca 41
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
          (papaya)
          Length = 88

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tgcctggctccctgtatgccaca 43
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccaca 26




>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
          pekinensis
          Length = 88

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tgcctggctccctgtatgccaca 43
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccaca 26




>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
          Length = 87

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tgcctggctccctgtatgccaca 43
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccaca 26




>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
          trichocarpa
          Length = 86

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgtgcctggctccctgtatgcca 41
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
          trichocarpa
          Length = 90

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tgcctggctccctgtatgccaca 43
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccaca 26




>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
          Length = 89

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tgcctggctccctgtatgccaca 43
          |||||||||||||||||||||||
Sbjct: 3  tgcctggctccctgtatgccaca 25




>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
          (castor bean)
          Length = 90

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tgcctggctccctgtatgccaca 43
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccaca 26




>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
          (barrel medic)
          Length = 86

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgtgcctggctccctgtatgcca 41
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
          Length = 86

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgtgcctggctccctgtatgcca 41
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
          Indica Group
          Length = 88

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 gtgcctggctccctgtatgccac 42
          |||||||||||||||||||||||
Sbjct: 3  gtgcctggctccctgtatgccac 25




>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
          (thale cress)
          Length = 87

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 tgcctggctccctgtatgccac 42
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
          Length = 85

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 tgcctggctccctgtatgccac 42
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
          (sorghum)
          Length = 106

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 tgcctggctccctgtatgccac 42
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
          (sorghum)
          Length = 101

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 tgcctggctccctgtatgccac 42
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
          Indica Group
          Length = 136

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 tgcctggctccctgtatgccac 42
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
          patens subsp. patens
          Length = 87

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 tgcctggctccctgtatgccac 42
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;ABEU01007064.1/27442-27356 145481:Physcomitrella
          patens subsp. patens
          Length = 87

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 tgcctggctccctgtatgccac 42
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25