miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 83 tgatgccggaccaggcttcattcccctcaac 113
||||| |||||||||||||||||||||||||
Sbjct: 68 tgatgtcggaccaggcttcattcccctcaac 98
>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana (thale
cress)
Length = 101
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 83 tgatgccggaccaggcttcattcccctcaac 113
||||| |||||||||||||||||||||||||
Sbjct: 71 tgatgtcggaccaggcttcattcccctcaac 101
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaac 113
|||||||||||||||||||||||||
Sbjct: 101 cggaccaggcttcattcccctcaac 125
>RF00075;mir-166;AC189591.2/50508-50400 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaac 113
|||||||||||||||||||||||||
Sbjct: 85 cggaccaggcttcattcccctcaac 109
>RF00075;mir-166;AC189313.2/128870-128784 51351:Brassica rapa
subsp. pekinensis
Length = 87
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 ggactgttgtctggctcgaggtcat 48
|||||||||||||||||||||||||
Sbjct: 8 ggactgttgtctggctcgaggtcat 32
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaac 113
|||||||||||||||||||||||||
Sbjct: 76 cggaccaggcttcattcccctcaac 100
>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
Length = 96
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaac 113
|||||||||||||||||||||||||
Sbjct: 72 cggaccaggcttcattcccctcaac 96
>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
Length = 90
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaac 113
|||||||||||||||||||||||||
Sbjct: 66 cggaccaggcttcattcccctcaac 90
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaac 113
|||||||||||||||||||||||||
Sbjct: 133 cggaccaggcttcattcccctcaac 157
>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
Length = 90
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaac 113
|||||||||||||||||||||||||
Sbjct: 66 cggaccaggcttcattcccctcaac 90
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaac 113
|||||||||||||||||||||||||
Sbjct: 95 cggaccaggcttcattcccctcaac 119
>RF00075;mir-166;ABXC01000331.1/255164-255261 4558:Sorghum bicolor
(sorghum)
Length = 98
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaac 113
|||||||||||||||||||||||||
Sbjct: 74 cggaccaggcttcattcccctcaac 98
>RF00075;mir-166;AC027660.2/136704-136618 39947:Oryza sativa
Japonica Group
Length = 87
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaac 113
|||||||||||||||||||||||||
Sbjct: 63 cggaccaggcttcattcccctcaac 87
>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
Indica Group
Length = 87
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaac 113
|||||||||||||||||||||||||
Sbjct: 63 cggaccaggcttcattcccctcaac 87
>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
(papaya)
Length = 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaa 112
||||||||||||||||||||||||
Sbjct: 76 cggaccaggcttcattcccctcaa 99
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaa 112
||||||||||||||||||||||||
Sbjct: 98 cggaccaggcttcattcccctcaa 121
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaa 112
||||||||||||||||||||||||
Sbjct: 121 cggaccaggcttcattcccctcaa 144
>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus trichocarpa
Length = 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaa 112
||||||||||||||||||||||||
Sbjct: 64 cggaccaggcttcattcccctcaa 87
>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaa 112
||||||||||||||||||||||||
Sbjct: 70 cggaccaggcttcattcccctcaa 93
>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaa 112
||||||||||||||||||||||||
Sbjct: 82 cggaccaggcttcattcccctcaa 105
>RF00075;mir-166;CU302248.6/62232-62044 3880:Medicago truncatula
(barrel medic)
Length = 189
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaa 112
||||||||||||||||||||||||
Sbjct: 165 cggaccaggcttcattcccctcaa 188
>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaa 112
||||||||||||||||||||||||
Sbjct: 99 cggaccaggcttcattcccctcaa 122
>RF00075;mir-166;BABK01039514.1/607-703 34305:Lotus japonicus
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 80 gagtgatgccggaccaggcttcattcccctca 111
||||||| |||||||||||||||||||||||
Sbjct: 64 gagtgatttcggaccaggcttcattcccctca 95
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaa 112
||||||||||||||||||||||||
Sbjct: 126 cggaccaggcttcattcccctcaa 149
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaa 112
||||||||||||||||||||||||
Sbjct: 73 cggaccaggcttcattcccctcaa 96
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaa 112
||||||||||||||||||||||||
Sbjct: 73 cggaccaggcttcattcccctcaa 96
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctcaa 112
||||||||||||||||||||||||
Sbjct: 79 cggaccaggcttcattcccctcaa 102
>RF00075;mir-166;EU548832.1/235-380 3702:Arabidopsis thaliana
(thale cress)
Length = 146
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ggggactgttgtctggctcgagg 44
|||||||||||||||||||||||
Sbjct: 6 ggggactgttgtctggctcgagg 28
>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana
(thale cress)
Length = 122
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ggggactgttgtctggctcgagg 44
|||||||||||||||||||||||
Sbjct: 6 ggggactgttgtctggctcgagg 28
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus trichocarpa
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 79 tgagtgatgccggaccaggcttcattcccctcaac 113
|||||||| |||||||||||||||||||| ||||
Sbjct: 60 tgagtgatctcggaccaggcttcattccccccaac 94
>RF00075;mir-166;AARH01009662.1/134102-134198 3694:Populus
trichocarpa
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctca 111
|||||||||||||||||||||||
Sbjct: 73 cggaccaggcttcattcccctca 95
>RF00075;mir-166;AARH01001058.1/130278-130374 3694:Populus
trichocarpa
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 79 tgagtgatgccggaccaggcttcattcccctcaac 113
|||||||| |||||||||||||||||||| ||||
Sbjct: 63 tgagtgatttcggaccaggcttcattccccccaac 97
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 17 gttgtggggactgttgtctggctcgaggtca 47
|||| ||||| ||||||||||||||||||||
Sbjct: 1 gttgaggggaatgttgtctggctcgaggtca 31
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 ggggactgttgtctggctcgaggtcat 48
||||| |||||||||||||||||||||
Sbjct: 6 ggggaatgttgtctggctcgaggtcat 32
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctca 111
|||||||||||||||||||||||
Sbjct: 90 cggaccaggcttcattcccctca 112
>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
Length = 122
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctca 111
|||||||||||||||||||||||
Sbjct: 100 cggaccaggcttcattcccctca 122
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctca 111
|||||||||||||||||||||||
Sbjct: 94 cggaccaggcttcattcccctca 116
>RF00075;mir-166;ABXC01000758.1/126828-126715 4558:Sorghum bicolor
(sorghum)
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctca 111
|||||||||||||||||||||||
Sbjct: 90 cggaccaggcttcattcccctca 112
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctca 111
|||||||||||||||||||||||
Sbjct: 97 cggaccaggcttcattcccctca 119
>RF00075;mir-166;ABEU01002487.1/1609-1703 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctca 111
|||||||||||||||||||||||
Sbjct: 71 cggaccaggcttcattcccctca 93
>RF00075;mir-166;ABEU01002053.1/8010-8104 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctca 111
|||||||||||||||||||||||
Sbjct: 71 cggaccaggcttcattcccctca 93
>RF00075;mir-166;ABEU01003209.1/178750-178656 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctca 111
|||||||||||||||||||||||
Sbjct: 71 cggaccaggcttcattcccctca 93
>RF00075;mir-166;ABEU01002839.1/114707-114612 145481:Physcomitrella
patens subsp. patens
Length = 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctca 111
|||||||||||||||||||||||
Sbjct: 72 cggaccaggcttcattcccctca 94
>RF00075;mir-166;ABEU01008046.1/36699-36780 145481:Physcomitrella
patens subsp. patens
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 ccggaccaggcttcattcccctc 110
|||||||||||||||||||||||
Sbjct: 57 ccggaccaggcttcattcccctc 79
>RF00075;mir-166;ABEU01005077.1/22634-22717 145481:Physcomitrella
patens subsp. patens
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 ccggaccaggcttcattcccctc 110
|||||||||||||||||||||||
Sbjct: 59 ccggaccaggcttcattcccctc 81
>RF00075;mir-166;ABEU01001509.1/37358-37431 145481:Physcomitrella
patens subsp. patens
Length = 74
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctca 111
|||||||||||||||||||||||
Sbjct: 50 cggaccaggcttcattcccctca 72
>RF00075;mir-166;AARH01003279.1/141842-141699 3694:Populus
trichocarpa
Length = 144
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 tgttgtctggctcgaggtcatt 49
||||||||||||||||||||||
Sbjct: 12 tgttgtctggctcgaggtcatt 33
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 ggggactgttgtctggctcgaggtca 47
||||| ||||||||||||||||||||
Sbjct: 6 ggggaatgttgtctggctcgaggtca 31
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 83 tgatgccggaccaggcttcattcccc 108
||||| ||||||||||||||||||||
Sbjct: 125 tgatgtcggaccaggcttcattcccc 150
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 ggggactgttgtctggctcgaggtca 47
||||| ||||||||||||||||||||
Sbjct: 6 ggggaatgttgtctggctcgaggtca 31
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 ggggactgttgtctggctcgaggtca 47
||||| ||||||||||||||||||||
Sbjct: 4 ggggaatgttgtctggctcgaggtca 29
>RF00075;mir-166;ABEU01001509.1/36651-36730 145481:Physcomitrella
patens subsp. patens
Length = 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctc 110
||||||||||||||||||||||
Sbjct: 56 cggaccaggcttcattcccctc 77
>RF00075;mir-166;ABEU01001509.1/36829-36913 145481:Physcomitrella
patens subsp. patens
Length = 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 cggaccaggcttcattcccctc 110
||||||||||||||||||||||
Sbjct: 61 cggaccaggcttcattcccctc 82
