miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
          (barrel medic)
          Length = 86

 Score =  107 bits (54), Expect = 3e-23
 Identities = 78/86 (90%)
 Strand = Plus / Plus

                                                                      
Query: 8  atgtgcctggctccctgtatgccatatacgaagcttattgaaatatcaataacctttgtg 67
          |||||||||||||||||||||||||||| |||||| ||||||| |||||| |||||||||
Sbjct: 1  atgtgcctggctccctgtatgccatatatgaagctcattgaaaaatcaatgacctttgtg 60

                                    
Query: 68 gatggcgtacgggaagccaggcatat 93
          ||||||||| | | ||||| ||||||
Sbjct: 61 gatggcgtatgaggagccaagcatat 86




>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
          trichocarpa
          Length = 86

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 8  atgtgcctggctccctgtatgccat 32
          |||||||||||||||||||||||||
Sbjct: 1  atgtgcctggctccctgtatgccat 25




>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
          Length = 86

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 8  atgtgcctggctccctgtatgccat 32
          |||||||||||||||||||||||||
Sbjct: 1  atgtgcctggctccctgtatgccat 25




>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
          (papaya)
          Length = 85

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  tgtgcctggctccctgtatgccat 32
          ||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccat 25




>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
          (thale cress)
          Length = 85

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 tgcctggctccctgtatgccatat 34
          ||||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccatat 27




>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
          (castor bean)
          Length = 86

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  tgtgcctggctccctgtatgccat 32
          ||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccat 25




>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
          (barrel medic)
          Length = 86

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  tgtgcctggctccctgtatgccat 32
          ||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccat 25




>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
          (sorghum)
          Length = 89

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 8  atgtgcctggctccctgtatgcca 31
          ||||||||||||||||||||||||
Sbjct: 1  atgtgcctggctccctgtatgcca 24




>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
          Length = 96

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 8  atgtgcctggctccctgtatgcca 31
          ||||||||||||||||||||||||
Sbjct: 1  atgtgcctggctccctgtatgcca 24




>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
          Indica Group
          Length = 93

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 8  atgtgcctggctccctgtatgcca 31
          ||||||||||||||||||||||||
Sbjct: 1  atgtgcctggctccctgtatgcca 24




>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
          Length = 90

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
          burmannicoides
          Length = 87

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
          Length = 87

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
          (sorghum)
          Length = 90

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
          Indica Group
          Length = 88

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
          Length = 90

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24




>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
          (papaya)
          Length = 86

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccat 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccat 25




>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
          (thale cress)
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 gtgcctggctccctgtatgcca 31
          ||||||||||||||||||||||
Sbjct: 3  gtgcctggctccctgtatgcca 24




>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
          Length = 89

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccat 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccat 25




>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
          Length = 86

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccat 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccat 25




>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
          Length = 86

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccat 32
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccat 25




>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
          Length = 92

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 gtgcctggctccctgtatgcca 31
          ||||||||||||||||||||||
Sbjct: 3  gtgcctggctccctgtatgcca 24




>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
          Indica Group
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 gtgcctggctccctgtatgcca 31
          ||||||||||||||||||||||
Sbjct: 3  gtgcctggctccctgtatgcca 24