miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
           trichocarpa
          Length = 91

 Score =  172 bits (87), Expect = 7e-43
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                       
Query: 23  ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 64

                                      
Query: 83  accgatcgataaacctctgcatccagc 109
           |||||||||||||||||||||||||||
Sbjct: 65  accgatcgataaacctctgcatccagc 91




>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
          Length = 91

 Score = 99.6 bits (50), Expect = 9e-21
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                       
Query: 23  ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 82
           |||||||||||||||||||||| ||||||   | ||||||||||  |||||| |||| ||
Sbjct: 5   ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaacacga 64

                                     
Query: 83  accgatcgataaacctctgcatccag 108
           ||||||||||||||||||||||||||
Sbjct: 65  accgatcgataaacctctgcatccag 90




>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
          (papaya)
          Length = 91

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 23 ggaggcagcggttcatcgatctcttcctgg 52
          ||||||||||||||||||||||||||||||
Sbjct: 5  ggaggcagcggttcatcgatctcttcctgg 34



 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 76  aacatgaaccgatcgataaacctctgcatccagc 109
           |||||||| |||||||||||||||||||||||||
Sbjct: 58  aacatgaatcgatcgataaacctctgcatccagc 91




>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
          (castor bean)
          Length = 96

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 23 ggaggcagcggttcatcgatctcttcctgg 52
          ||||||||||||||||||||||||||||||
Sbjct: 5  ggaggcagcggttcatcgatctcttcctgg 34



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 78  catgaaccgatcgataaacctctgcatccagc 109
           |||||| |||||||||||||||||||||||||
Sbjct: 65  catgaatcgatcgataaacctctgcatccagc 96




>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
          (thale cress)
          Length = 88

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 23 ggaggcagcggttcatcgatctcttcctg 51
          |||||||||||||||||||||||||||||
Sbjct: 5  ggaggcagcggttcatcgatctcttcctg 33



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 73  aaaaacatgaaccgatcgataaacctctgcatccagc 109
           |||| ||||||  ||||||||||||||||||||||||
Sbjct: 52  aaaagcatgaatagatcgataaacctctgcatccagc 88




>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
           (barrel medic)
          Length = 90

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 75  aaacatgaaccgatcgataaacctctgcatccagc 109
           ||||||||| || ||||||||||||||||||||||
Sbjct: 56  aaacatgaatcggtcgataaacctctgcatccagc 90




>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa subsp.
           pekinensis
          Length = 92

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 73  aaaaacatgaaccgatcgataaacctctgcatccagc 109
           |||| ||||||| ||||||||||||| ||||||||||
Sbjct: 56  aaaagcatgaacagatcgataaacctgtgcatccagc 92




>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
           (thale cress)
          Length = 91

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 85  cgatcgataaacctctgcatccagc 109
           |||||||||||||||||||||||||
Sbjct: 67  cgatcgataaacctctgcatccagc 91




>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
          Length = 88

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 27 gcagcggttcatcgatctcttcctg 51
          |||||||||||||||||||||||||
Sbjct: 9  gcagcggttcatcgatctcttcctg 33



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 88  tcgataaacctctgcatccagc 109
           ||||||||||||||||||||||
Sbjct: 67  tcgataaacctctgcatccagc 88




>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
           (sorghum)
          Length = 132

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 85  cgatcgataaacctctgcatccagc 109
           |||||||||||||||||||||||||
Sbjct: 108 cgatcgataaacctctgcatccagc 132




>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
           Group
          Length = 158

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 85  cgatcgataaacctctgcatccag 108
           ||||||||||||||||||||||||
Sbjct: 134 cgatcgataaacctctgcatccag 157




>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
           Indica Group
          Length = 159

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 85  cgatcgataaacctctgcatccag 108
           ||||||||||||||||||||||||
Sbjct: 135 cgatcgataaacctctgcatccag 158




>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
          Length = 133

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 88  tcgataaacctctgcatccagc 109
           ||||||||||||||||||||||
Sbjct: 112 tcgataaacctctgcatccagc 133