miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AARH01007968.1/101578-101471 3694:Populus
trichocarpa
Length = 108
Score = 182 bits (92), Expect = 1e-45
Identities = 104/108 (96%)
Strand = Plus / Plus
Query: 40 aaagtttgatgcagccaaggatgatttgccgacgactcagtttttgcttccatatggtag 99
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 1 aaagtttgatgcagccaaggatgacttgccgacgactcaatttttgcttccatatggtag 60
Query: 100 gagagatgaagaggttggcaggttttccttggctacattttcctttct 147
||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagagatgaataggttggcaggttttccttggctacattttcctttct 108
>RF00645;MIR169_2;AARH01005671.1/55685-55803 3694:Populus
trichocarpa
Length = 119
Score = 65.9 bits (33), Expect = 2e-10
Identities = 46/49 (93%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 40 aaagtttgatgcagccaaggatgatttgccgacgactcagtttttgctt 88
|||| ||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 1 aaagattgatgcagccaaggatgacttgccgacgactc-gtttttgctt 48
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 113 gttggcaggttttccttggctacattttcctttct 147
||||||||||| | |||||||||||||| ||||||
Sbjct: 85 gttggcaggttgttcttggctacatttttctttct 119
>RF00645;MIR169_2;AASG02009044.1/9839-9706 3988:Ricinus communis
(castor bean)
Length = 134
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 41 aagtttgatgcagccaaggatgatttgccgac 72
||||||||||||||||||||||| ||||||||
Sbjct: 2 aagtttgatgcagccaaggatgacttgccgac 33
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 113 gttggcaggttttccttggctacattttcctttct 147
||||||||||| ||||||||||||| || ||||||
Sbjct: 100 gttggcaggttgtccttggctacatgtttctttct 134
