miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AARH01005671.1/55685-55803 3694:Populus
trichocarpa
Length = 119
Score = 178 bits (90), Expect = 2e-44
Identities = 116/125 (92%), Gaps = 6/125 (4%)
Strand = Plus / Minus
Query: 29 agaaagaaaaatgtagccaagaacaacctgccaacggattcatctcttcttgattatgcc 88
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 119 agaaagaaaaatgtagccaagaacaacctgccaacggattcatctcttcttaattatgcg 60
Query: 89 tatattgatggaagcaaaagcaaaagcgagtcgtcggcaagtcatccttggctgcatcaa 148
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 59 tatattgatg------aaagcaaaaacgagtcgtcggcaagtcatccttggctgcatcaa 6
Query: 149 tcttt 153
|||||
Sbjct: 5 tcttt 1
>RF00645;MIR169_2;AARH01007968.1/101578-101471 3694:Populus
trichocarpa
Length = 108
Score = 67.9 bits (34), Expect = 5e-11
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 116 gagtcgtcggcaagtcatccttggctgcatcaatcttt 153
||||||||||||||||||||||||||||||||| ||||
Sbjct: 38 gagtcgtcggcaagtcatccttggctgcatcaaacttt 1
Score = 60.0 bits (30), Expect = 1e-08
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 29 agaaagaaaaatgtagccaagaacaacctgccaacggattcatctcttct 78
|||||| |||||||||||||| | ||||||||||| |||||||||||||
Sbjct: 108 agaaaggaaaatgtagccaaggaaaacctgccaacctattcatctcttct 59
>RF00645;MIR169_2;AASG02009044.1/9839-9706 3988:Ricinus communis
(castor bean)
Length = 134
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 121 gtcggcaagtcatccttggctgcatcaa 148
||||||||||||||||||||||||||||
Sbjct: 33 gtcggcaagtcatccttggctgcatcaa 6
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 29 agaaagaaaaatgtagccaagaacaacctgccaac 63
||||||||| ||||||||||| |||||||||||||
Sbjct: 134 agaaagaaacatgtagccaaggacaacctgccaac 100
>RF00645;MIR169_2;AARH01000003.1/78094-77924 3694:Populus
trichocarpa
Length = 171
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 121 gtcggcaagtcatccttggctgcat 145
|||||||||||||||||||||||||
Sbjct: 33 gtcggcaagtcatccttggctgcat 9
>RF00645;MIR169_2;AASG02001387.1/35857-35778 3988:Ricinus communis
(castor bean)
Length = 80
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 121 gtcggcaagtcatccttggctgcat 145
|||||||||||||||||||||||||
Sbjct: 33 gtcggcaagtcatccttggctgcat 9
>RF00645;MIR169_2;ABIM01016748.1/13946-13822 3649:Carica papaya
(papaya)
Length = 125
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgcatc 146
||||||||||||||||||||||||
Sbjct: 34 cggcaagtcatccttggctgcatc 11
>RF00645;MIR169_2;CAAP02000269.1/151468-151586 29760:Vitis vinifera
Length = 119
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 121 gtcggcaagtcatccttggctgca 144
||||||||||||||||||||||||
Sbjct: 33 gtcggcaagtcatccttggctgca 10
>RF00645;MIR169_2;BT060668.1/99-217 4577:Zea mays
Length = 119
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgcatc 146
||||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgcatc 8
>RF00645;MIR169_2;ABXC01004427.1/51987-51869 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgcatc 146
||||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgcatc 8
>RF00645;MIR169_2;AP008214.1/7634984-7635113 39947:Oryza sativa
Japonica Group
Length = 130
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgcatc 146
||||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgcatc 8
>RF00645;MIR169_2;AL662968.3/150189-150074 39947:Oryza sativa
Japonica Group
Length = 116
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgcatc 146
||||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgcatc 8
>RF00645;MIR169_2;ABIM01024501.1/586-465 3649:Carica papaya (papaya)
Length = 122
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgcat 145
|||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgcat 9
>RF00645;MIR169_2;AC189369.2/97764-97940 51351:Brassica rapa subsp.
pekinensis
Length = 177
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 122 tcggcaagtcatccttggctgca 144
|||||||||||||||||||||||
Sbjct: 32 tcggcaagtcatccttggctgca 10
>RF00645;MIR169_2;AP000603.1/13143-12929 3702:Arabidopsis thaliana
(thale cress)
Length = 215
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 122 tcggcaagtcatccttggctgca 144
|||||||||||||||||||||||
Sbjct: 32 tcggcaagtcatccttggctgca 10
>RF00645;MIR169_2;AL392145.1/61605-61729 3702:Arabidopsis thaliana
(thale cress)
Length = 125
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgcat 145
|||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgcat 9
>RF00645;MIR169_2;AARH01007603.1/209255-209144 3694:Populus
trichocarpa
Length = 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgcat 145
|||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgcat 9
>RF00645;MIR169_2;AARH01002993.1/21348-21232 3694:Populus
trichocarpa
Length = 117
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgcat 145
|||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgcat 9
>RF00645;MIR169_2;AASG02006838.1/6632-6742 3988:Ricinus communis
(castor bean)
Length = 111
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 122 tcggcaagtcatccttggctgca 144
|||||||||||||||||||||||
Sbjct: 32 tcggcaagtcatccttggctgca 10
>RF00645;MIR169_2;AC148485.10/86560-86786 3880:Medicago truncatula
(barrel medic)
Length = 227
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgcat 145
|||||||||||||||||||||||
Sbjct: 32 cggcaagtcatccttggctgcat 10
>RF00645;MIR169_2;AM489765.1/426-571 4102:Petunia x hybrida
Length = 146
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgcat 145
|||||||||||||||||||||||
Sbjct: 34 cggcaagtcatccttggctgcat 12
>RF00645;MIR169_2;AM422776.1/2510-2609 4151:Antirrhinum majus
(snapdragon)
Length = 100
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 119 tcgtcggcaagtcatccttggct 141
|||||||||||||||||||||||
Sbjct: 37 tcgtcggcaagtcatccttggct 15
>RF00645;MIR169_2;CAAP02000116.1/144670-144487 29760:Vitis vinifera
Length = 184
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 122 tcggcaagtcatccttggctgca 144
|||||||||||||||||||||||
Sbjct: 34 tcggcaagtcatccttggctgca 12
>RF00645;MIR169_2;AM434841.1/8747-8930 29760:Vitis vinifera
Length = 184
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 122 tcggcaagtcatccttggctgca 144
|||||||||||||||||||||||
Sbjct: 34 tcggcaagtcatccttggctgca 12
>RF00645;MIR169_2;CAAP02000151.1/80017-79930 29760:Vitis vinifera
Length = 88
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgcat 145
|||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgcat 9
>RF00645;MIR169_2;ABXC01006862.1/83418-83293 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgcat 145
|||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgcat 9
>RF00645;MIR169_2;ABXC01001826.1/87733-87847 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 122 tcggcaagtcatccttggctgca 144
|||||||||||||||||||||||
Sbjct: 32 tcggcaagtcatccttggctgca 10
>RF00645;MIR169_2;AP005769.3/167010-166879 39947:Oryza sativa
Japonica Group
Length = 132
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgcat 145
|||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgcat 9
>RF00645;MIR169_2;AP008207.1/8728130-8728248 39947:Oryza sativa
Japonica Group
Length = 119
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 122 tcggcaagtcatccttggctgca 144
|||||||||||||||||||||||
Sbjct: 32 tcggcaagtcatccttggctgca 10
>RF00645;MIR169_2;ABIM01024501.1/10420-10301 3649:Carica papaya
(papaya)
Length = 120
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgca 144
||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgca 10
>RF00645;MIR169_2;ABIM01004543.1/8825-9065 3649:Carica papaya
(papaya)
Length = 241
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgca 144
||||||||||||||||||||||
Sbjct: 33 cggcaagtcatccttggctgca 12
>RF00645;MIR169_2;AARH01007178.1/187626-187874 3694:Populus
trichocarpa
Length = 249
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgca 144
||||||||||||||||||||||
Sbjct: 35 cggcaagtcatccttggctgca 14
>RF00645;MIR169_2;AASG02007020.1/8399-8148 3988:Ricinus communis
(castor bean)
Length = 252
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgca 144
||||||||||||||||||||||
Sbjct: 33 cggcaagtcatccttggctgca 12
>RF00645;MIR169_2;AC135313.13/45543-45452 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgca 144
||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgca 10
>RF00645;MIR169_2;BABK01024578.1/123-239 34305:Lotus japonicus
Length = 117
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgca 144
||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgca 10
>RF00645;MIR169_2;BABK01005902.1/1720-1822 34305:Lotus japonicus
Length = 103
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgca 144
||||||||||||||||||||||
Sbjct: 33 cggcaagtcatccttggctgca 12
>RF00645;MIR169_2;BABK01004287.1/2937-3041 34305:Lotus japonicus
Length = 105
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgca 144
||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgca 10
>RF00645;MIR169_2;AC232769.1/98561-98655 4081:Solanum lycopersicum
Length = 95
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgca 144
||||||||||||||||||||||
Sbjct: 34 cggcaagtcatccttggctgca 13
>RF00645;MIR169_2;CAAP02002239.1/50886-50767 29760:Vitis vinifera
Length = 120
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgca 144
||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgca 10
>RF00645;MIR169_2;CAAP02002239.1/44264-44145 29760:Vitis vinifera
Length = 120
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgca 144
||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgca 10
>RF00645;MIR169_2;AM488283.1/32022-31880 29760:Vitis vinifera
Length = 143
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgca 144
||||||||||||||||||||||
Sbjct: 33 cggcaagtcatccttggctgca 12
>RF00645;MIR169_2;AM444055.2/7771-7675 29760:Vitis vinifera
Length = 97
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123 cggcaagtcatccttggctgca 144
||||||||||||||||||||||
Sbjct: 31 cggcaagtcatccttggctgca 10
