miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
(castor bean)
Length = 133
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 2 tgtcatgcttttccacagctttcttgaactt 32
|||||||||||||||||||||||||||||||
Sbjct: 1 tgtcatgcttttccacagctttcttgaactt 31
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
trichocarpa
Length = 148
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 3 gtcatgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaactt 31
>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
trichocarpa
Length = 157
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 3 gtcatgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaactt 31
>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 3 gtcatgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaactt 31
>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
Length = 108
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 3 gtcatgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaactt 31
>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
Length = 113
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 2 tgtcatgcttttccacagctttcttgaact 31
||||||||||||||||||||||||||||||
Sbjct: 1 tgtcatgcttttccacagctttcttgaact 30
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana
(thale cress)
Length = 136
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3 gtcatgcttttccacagctttcttgaactttc 34
||||| ||||||||||||||||||||||||||
Sbjct: 2 gtcatacttttccacagctttcttgaactttc 33
>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
Length = 105
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaactt 31
>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
pine)
Length = 108
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 tgtcatgcttttccacagctttcttgaacttt 33
|||||| |||||||||||||||||||||||||
Sbjct: 1 tgtcatacttttccacagctttcttgaacttt 32
>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
(papaya)
Length = 159
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 gtcatgcttttccacagctttcttgaactt 32
|||||| |||||||||||||||||||||||
Sbjct: 2 gtcatgtttttccacagctttcttgaactt 31
>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
Length = 261
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 141 aaagttcaagaaagttgtgggaaaatatgg 170
||||||||||||||||||||||||| ||||
Sbjct: 229 aaagttcaagaaagttgtgggaaaagatgg 258
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 tcatgcttttccacagctttcttgaactt 32
||||| |||||||||||||||||||||||
Sbjct: 3 tcatgtttttccacagctttcttgaactt 31
>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
trichocarpa
Length = 105
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 5 catgcttttccacagctttcttgaactt 32
|||| |||||||||||||||||||||||
Sbjct: 101 catgtttttccacagctttcttgaactt 74
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 3 gtcatgcttttccacagctttcttgaactt 32
|||||||| |||||| ||||||||||||||
Sbjct: 2 gtcatgctattccacggctttcttgaactt 31
>RF00648;MIR396;AARH01003359.1/52522-52352 3694:Populus
trichocarpa
Length = 171
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
||||||||||||| ||||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaactt 31
>RF00648;MIR396;AM481354.2/2056-2230 29760:Vitis vinifera
Length = 175
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
||||||||||||| ||||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaactt 31
>RF00648;MIR396;ABXC01002982.1/36897-37040 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
||||| ||||||||||||||||||||||
Sbjct: 4 catgcctttccacagctttcttgaactt 31
>RF00648;MIR396;AP008208.1/34306506-34306365 39947:Oryza sativa
Japonica Group
Length = 142
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
||||| ||||||||||||||||||||||
Sbjct: 4 catgcctttccacagctttcttgaactt 31
>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
Length = 87
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttttccacagctttcttgaactt 32
|||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaactt 31
