miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 105 bits (53), Expect = 2e-22
Identities = 80/85 (94%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 1 cggcggtctctgattcgcttggtgcagcgtcgggaactgattcggcgatttgattgcgca 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 5 cggcggtctctgattcgcttggtgcag-gtcgggaactgattcggcgatttgattgc-ca 62
Query: 61 cgctggctggacatgactggttgtt 85
| ||||| ||||||||||||||||
Sbjct: 63 -gatggctcgacatgactggttgtt 86
Score = 89.7 bits (45), Expect = 1e-17
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 126 tagcgaattggatcccgccttgcatcaactgaatcggaggccgcg 170
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tagcgaattggatcccgccttgcatcaactgaatcggaggccgcg 173
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 89.7 bits (45), Expect = 1e-17
Identities = 55/57 (96%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 cggcggtctctgattcgcttggtgcagcgtcgggaactgattcggcgatttgattgc 57
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctaattcgcttggtgcag-gtcgggaactgattcggcgatttgattgc 60
Score = 73.8 bits (37), Expect = 7e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 130 gaattggatcccgccttgcatcaactgaatcggaggccgcg 170
||||||||||||||||||||||||||||||||||| |||||
Sbjct: 109 gaattggatcccgccttgcatcaactgaatcggagaccgcg 149
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 81.8 bits (41), Expect = 3e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 130 gaattggatcccgccttgcatcaactgaatcggaggccgcg 170
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gaattggatcccgccttgcatcaactgaatcggaggccgcg 115
Score = 46.1 bits (23), Expect = 2e-04
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 3 gcggtctctgattcgcttggtgcagcgtcgggaac 37
||||||||| ||||||||||||||| |||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcag-gtcgggaac 40
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 79.8 bits (40), Expect = 1e-14
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 127 agcgaattggatcccgccttgcatcaactgaatcggaggccgcg 170
|||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 27 agcgaattggatcccgccttgcatcaactgaatcggagaccgcg 70
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 67.9 bits (34), Expect = 4e-11
Identities = 41/42 (97%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 1 cggcggtctctgattcgcttggtgcagcgtcgggaactgatt 42
||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5 cggcggtctctgattcgcttggtgcag-gtcgggaactgatt 45
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 138 tcccgccttgcatcaactgaatc 160
|||||||||||||||||||||||
Sbjct: 88 tcccgccttgcatcaactgaatc 110
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 67.9 bits (34), Expect = 4e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 130 gaattggatcccgccttgcatcaactgaatcgga 163
||||||||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactgaatcgga 124
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 67.9 bits (34), Expect = 4e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 135 ggatcccgccttgcatcaactgaatcggaggccg 168
||||||||||||||||||||||||||||||||||
Sbjct: 95 ggatcccgccttgcatcaactgaatcggaggccg 128
Score = 60.0 bits (30), Expect = 1e-08
Identities = 40/42 (95%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 1 cggcggtctctgattcgcttggtgcagcgtcgggaactgatt 42
|||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcag-gtcgggaactgatt 45
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 132 attggatcccgccttgcatcaactgaatcggag 164
|||||||||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactgaatcggag 125
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 132 attggatcccgccttgcatcaactgaatcggag 164
|||||||||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactgaatcggag 125
Score = 46.1 bits (23), Expect = 2e-04
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 12 gattcgcttggtgcagcgtcgggaactgatt 42
|||||||||||||||| ||||||||||||||
Sbjct: 16 gattcgcttggtgcag-gtcgggaactgatt 45
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 132 attggatcccgccttgcatcaactgaatcggag 164
|||||||||||||||||||||||||||||||||
Sbjct: 94 attggatcccgccttgcatcaactgaatcggag 126
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 132 attggatcccgccttgcatcaactgaatcggag 164
|||||||||||||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactgaatcggag 123
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 63.9 bits (32), Expect = 7e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 132 attggatcccgccttgcatcaactgaatcgga 163
||||||||||||||||||||||||||||||||
Sbjct: 97 attggatcccgccttgcatcaactgaatcgga 128
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 63.9 bits (32), Expect = 7e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 130 gaattggatcccgccttgcatcaactgaatcg 161
||||||||||||||||||||||||||||||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcg 141
Score = 60.0 bits (30), Expect = 1e-08
Identities = 40/42 (95%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 1 cggcggtctctgattcgcttggtgcagcgtcgggaactgatt 42
||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 5 cggcggtctctaattcgcttggtgcag-gtcgggaactgatt 45
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 60.0 bits (30), Expect = 1e-08
Identities = 40/42 (95%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 1 cggcggtctctgattcgcttggtgcagcgtcgggaactgatt 42
|||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 5 cggcggtctcagattcgcttggtgcag-gtcgggaactgatt 45
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 60.0 bits (30), Expect = 1e-08
Identities = 40/42 (95%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 1 cggcggtctctgattcgcttggtgcagcgtcgggaactgatt 42
|||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcag-gtcgggaactgatt 45
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 132 attggatcccgccttgcatcaactgaatcggag 164
||||| |||||||||||||||||||||||||||
Sbjct: 90 attggctcccgccttgcatcaactgaatcggag 122
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 132 attggatcccgccttgcatcaactgaatcggag 164
|||||||||||||||||||||| ||||||||||
Sbjct: 91 attggatcccgccttgcatcaaatgaatcggag 123
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 136 gatcccgccttgcatcaactgaatcggag 164
|||||||||||||||||||||||||||||
Sbjct: 107 gatcccgccttgcatcaactgaatcggag 135
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 138 tcccgccttgcatcaactgaatcggag 164
|||||||||||||||||||||||||||
Sbjct: 98 tcccgccttgcatcaactgaatcggag 124
Score = 46.1 bits (23), Expect = 2e-04
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 12 gattcgcttggtgcagcgtcgggaactgatt 42
|||||||||||||||| ||||||||||||||
Sbjct: 16 gattcgcttggtgcag-gtcgggaactgatt 45
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 52.0 bits (26), Expect = 3e-06
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 1 cggcggtctctgattcgcttggtgcagcgtcgggaactgatt 42
||||||| || |||||||||||||||| ||||||||||||||
Sbjct: 5 cggcggtttcggattcgcttggtgcag-gtcgggaactgatt 45
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 142 gccttgcatcaactgaatcggag 164
|||||||||||||||||||||||
Sbjct: 92 gccttgcatcaactgaatcggag 114
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 52.0 bits (26), Expect = 3e-06
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 5 ggtctctgattcgcttggtgcagcgtcgggaactgatt 42
|||||| |||||||||||||||| ||||||||||||||
Sbjct: 9 ggtctcagattcgcttggtgcag-gtcgggaactgatt 45
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 136 gatcccgccttgcatcaactgaatc 160
|||||||||||||||||||||||||
Sbjct: 69 gatcccgccttgcatcaactgaatc 93
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 48.1 bits (24), Expect = 4e-05
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 12 gattcgcttggtgcagcgtcgggaactgattc 43
|||||||||||||||| |||||||||||||||
Sbjct: 16 gattcgcttggtgcag-gtcgggaactgattc 46
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 138 tcccgccttgcatcaactgaatcgga 163
|||||| |||||||||||||||||||
Sbjct: 92 tcccgctttgcatcaactgaatcgga 117
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 131 aattggatcccgccttgcatcaactgaatcggaggc 166
|||||||||| |||||||||||| |||||||||||
Sbjct: 67 aattggatcctgccttgcatcaatcgaatcggaggc 102
Score = 44.1 bits (22), Expect = 6e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 8 ctctgattcgcttggtgcagcgtcgggaac 37
|||||||||||||||||||| |||||||||
Sbjct: 12 ctctgattcgcttggtgcag-gtcgggaac 40
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 135 ggatcccgccttgcatcaactgaatcggag 164
||||||||||||||| ||| ||||||||||
Sbjct: 61 ggatcccgccttgcaccaagtgaatcggag 90
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa Japonica
Group
Length = 104
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 135 ggatcccgccttgcatcaactgaatcggag 164
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
