miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 737 bits (372), Expect = 0.0
Identities = 422/438 (96%), Gaps = 6/438 (1%)
Strand = Plus / Plus
Query: 19 tggtttgagaggttgaagctgccagcatgatctggtaatgaacgtgttactctcatttat 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtttgagaggttgaagctgccagcatgatctggtaatgaacgtgttactctcatttat 60
Query: 79 atatatat----taacattaatcttatagcagtatctgtaggtagaaaaaatttaatgtt 134
|||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 61 atatatatatattaacattaatcatatagcagtatttgtaggtagaaaaaatttaatgtt 120
Query: 135 gtcaaagatatatactgaatcgtggttgctaggtttgtattactagtttaggatgcatgt 194
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 121 gtcaaagatatatactgaatcgtggtagctaggtttgtattactagtttaggatgcaagt 180
Query: 195 ttttgatcttatgatgatcaattgcttgtgagttcctaggcaatgaaaacagaatatata 254
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct: 181 ttttgatcttatgatgatcaattgcttgtgagttctttggcaatgaaaacagaatat--a 238
Query: 255 ctggtgatttttcccagtaaaattgtcgagaaaagggaattgcactaatagggaagacgc 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctggtgatttttcccagtaaaattgtcgagaaaagggaattgcactaatagggaagacgc 298
Query: 315 ataggtaaacttgtatctaaatggtatatgtatnttccaggcaaaagggtagaaacctaa 374
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 299 ataggtaaacttgtacctaaatggtatatgtattttccaggcaaaagggtagaaacctaa 358
Query: 375 tnagaaactagcttgaactcagagctataaaagtatatggttccatcaggtcatctagca 434
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 359 ttagaaactagcttgaactcagagctataaaagtatatggttccatcaggtcatcttgca 418
Query: 435 gcttcaatcactcactca 452
||||||||||||||||||
Sbjct: 419 gcttcaatcactcactca 436
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 105 bits (53), Expect = 6e-22
Identities = 76/83 (91%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 19 tggtttgagaggttgaagctgccagcatgatctggtaatgaacgtgttactctcatttat 78
||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||
Sbjct: 1 tggtttgagaggttgaagctgccagcatgatctggtaatgaacctattactc---tttat 57
Query: 79 atatatattaacattaatcttat 101
| |||||| ||||||||||||||
Sbjct: 58 acatatatcaacattaatcttat 80
Score = 105 bits (53), Expect = 6e-22
Identities = 100/116 (86%), Gaps = 4/116 (3%)
Strand = Plus / Plus
Query: 337 ggtatatgtatnttccaggcaaaagggtagaaacctaatnagaa----actagcttgaac 392
|||||| |||| ||||||| ||||||||||||| |||| |||| ||||||||||||
Sbjct: 316 ggtatacgtattttccaggaaaaagggtagaaaaataattagaattaaactagcttgaac 375
Query: 393 tcagagctataaaagtatatggttccatcaggtcatctagcagcttcaatcactca 448
| ||| || || || ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 376 ttagacctgtataaatatatggttccatcaggtcatcttgcagcttcaatcactca 431
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
(castor bean)
Length = 343
Score = 77.8 bits (39), Expect = 1e-13
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 19 tggtttgagaggttgaagctgccagcatgatctggtaatgaac 61
||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tggtttgagagattgaagctgccagcatgatctggtaatgaac 43
Score = 54.0 bits (27), Expect = 2e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 414 gttccatcaggtcatctagcagcttcaatcactca 448
||||||||||||||||| |||||||||||| ||||
Sbjct: 305 gttccatcaggtcatcttgcagcttcaatccctca 339
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 75.8 bits (38), Expect = 5e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 20 ggtttgagaggttgaagctgccagcatgatctggtaat 57
||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ggtttgagaggttgaagctgccagcatgatctggtaat 39
Score = 65.9 bits (33), Expect = 5e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 412 tggttccatcaggtcatctagcagcttcaatcactca 448
||||||||||||||||||| |||||||||||||||||
Sbjct: 114 tggttccatcaggtcatcttgcagcttcaatcactca 150
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 71.9 bits (36), Expect = 8e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 19 tggtttgagaggttgaagctgccagcatgatctggt 54
||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtttgagaggttgaagctgccagcatgatctggt 36
Score = 60.0 bits (30), Expect = 3e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 419 atcaggtcatctagcagcttcaatcactcactca 452
|||||||||||| |||||||||||||||||||||
Sbjct: 321 atcaggtcatcttgcagcttcaatcactcactca 354
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 63.9 bits (32), Expect = 2e-09
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 19 tggtttgagaggttgaagctgccagcatgatctggt 54
|||| |||||||||||||||||||||||||||||||
Sbjct: 1 tggtgtgagaggttgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 60.0 bits (30), Expect = 3e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 19 tggtttgagaggttgaagctgccagcatgatctg 52
|||| |||||||||||||||||||||||||||||
Sbjct: 1 tggtgtgagaggttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 56.0 bits (28), Expect = 5e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tggtttgagaggttgaagctgccagcatgatctggt 54
|||| ||||||| |||||||||||||||||||||||
Sbjct: 1 tggtgtgagaggctgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU952646.1/178-293 4577:Zea mays
Length = 116
Score = 54.0 bits (27), Expect = 2e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 19 tggtttgagaggttgaagctgccagcatgatctgg 53
|||| |||||| |||||||||||||||||||||||
Sbjct: 1 tggtgtgagagcttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 52.0 bits (26), Expect = 7e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctggtaat 57
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 52.0 bits (26), Expect = 7e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctggtaat 57
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 52.0 bits (26), Expect = 7e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctggtaat 57
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 48.1 bits (24), Expect = 1e-04
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 gttgaagctgccagcatgatctgg 53
||||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 48.1 bits (24), Expect = 1e-04
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctggtaatga 59
||||||||||||||||||||||| ||||
Sbjct: 14 tgaagctgccagcatgatctggttatga 41
>RF00640;MIR167_1;AACV01003428.1/8526-8249 39947:Oryza sativa
Japonica Group
Length = 278
Score = 48.1 bits (24), Expect = 1e-04
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 19 tggtttgagaggttgaagctgccagcatgatctggt 54
|||| |||||| |||||||||||||||||||||||
Sbjct: 1 tggtgtgagagaatgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 gttgaagctgccagcatgatctg 52
|||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 gttgaagctgccagcatgatctg 52
|||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctggt 54
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
