miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
trichocarpa
Length = 135
Score = 260 bits (131), Expect = 5e-69
Identities = 134/135 (99%)
Strand = Plus / Plus
Query: 12 ctttgtattcttccacagctttcttgaactgcacctattagatttatgttgatgttgttg 71
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcacctattagattaatgttgatgttgttg 60
Query: 72 tgcgatatgccatgaccatatgacattgtattcatttttgctgcggttcaataaagctgt 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgcgatatgccatgaccatatgacattgtattcatttttgctgcggttcaataaagctgt 120
Query: 132 gggaagatacaaaca 146
|||||||||||||||
Sbjct: 121 gggaagatacaaaca 135
>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus trichocarpa
Length = 126
Score = 87.7 bits (44), Expect = 4e-17
Identities = 112/131 (85%), Gaps = 9/131 (6%)
Strand = Plus / Plus
Query: 16 gtattcttccacagctttcttgaactgcacctattagatttatgttgatgttgttgtgcg 75
||||||||||||||||||||||||||||||||||| || | ||||| || ||||| ||
Sbjct: 5 gtattcttccacagctttcttgaactgcacctatttgaatattgttgttgatgttgc-cg 63
Query: 76 atatgccatgaccatatgacattgtattcatttttgctgcggttcaataaagctgtggga 135
||| ||| |||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 64 ---tgc-atgtacatatgacattgtatt----tttgttgcggttcaataaagctgtggga 115
Query: 136 agatacaaaca 146
|||||||||||
Sbjct: 116 agatacaaaca 126
>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis
(castor bean)
Length = 166
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 12 ctttgtattcttccacagctttcttgaactgcacctatta 51
||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcatctatta 40
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 113 tgcggttcaataaagctgtgggaagatacaaaca 146
||||||||||||||||||||||||||||| ||||
Sbjct: 133 tgcggttcaataaagctgtgggaagatacgaaca 166
>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 12 ctttgtattcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 113 tgcggttcaataaagctgtgggaagataca 142
||||||||||||||||||||||||||||||
Sbjct: 73 tgcggttcaataaagctgtgggaagataca 102
>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
Length = 100
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 12 ctttgtattcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 113 tgcggttcaataaagctgtgggaagata 140
||||||||||||||||||||||||||||
Sbjct: 67 tgcggttcaataaagctgtgggaagata 94
>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
Length = 119
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 12 ctttgtattcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 113 tgcggttcaataaagctgtgggaagatacaaaca 146
||||||||||||||||||||||||||||| ||||
Sbjct: 86 tgcggttcaataaagctgtgggaagataccaaca 119
>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
(papaya)
Length = 101
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 13 tttgtattcttccacagctttcttgaactgca 44
||||||||||||||||||||||||||||||||
Sbjct: 2 tttgtattcttccacagctttcttgaactgca 33
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 113 tgcggttcaataaagctgtgggaagataca 142
||||||||||||||||||||||||||||||
Sbjct: 68 tgcggttcaataaagctgtgggaagataca 97
>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
(thale cress)
Length = 152
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 15 tgtattcttccacagctttcttgaactgca 44
||||||||||||||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgca 33
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 113 tgcggttcaataaagctgtgggaagataca 142
||||||||||||||||||||||||||||||
Sbjct: 119 tgcggttcaataaagctgtgggaagataca 148
>RF00648;MIR396;AP005056.2/134150-134304 39947:Oryza sativa
Japonica Group
Length = 155
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgcac 45
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcac 34
>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
Length = 119
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa
Indica Group
Length = 117
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
>RF00648;MIR396;ABIM01023164.1/6366-6248 3649:Carica papaya
(papaya)
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactg 42
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>RF00648;MIR396;AASG02002614.1/17574-17698 3988:Ricinus communis
(castor bean)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactg 42
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>RF00648;MIR396;CAAP02002594.1/43203-43097 29760:Vitis vinifera
Length = 107
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactg 42
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
