miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 272 bits (137), Expect = 2e-72
Identities = 152/157 (96%)
Strand = Plus / Plus
Query: 16 gtgagcaagatggagaagcagggcacgtgcattactaactcatgcatacagagtgagaga 75
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 gtgagcaagatggagaagcagggcacgtgcattactaactcatgcacacagagtgagaga 60
Query: 76 gacatttcttgctcgagttatgactcttacctactatagattttgttggcctcagtgagt 135
||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 61 gacatttcttgctggagttatgactcttacctactatagattgtgttggcttcagcgagt 120
Query: 136 tagttcttcatgtgcctgtcttccccatcatgatcac 172
|||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagttcttcatgtgcctgtcttccccatcatgatcac 157
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 139 bits (70), Expect = 2e-32
Identities = 128/148 (86%), Gaps = 7/148 (4%)
Strand = Plus / Plus
Query: 24 gatggagaagcagggcacgtgcattactaactcatgcatacagagtgagagagacatttc 83
||||||||||||||||||||||| |||||||||||||| |||||| | |||| ||||||
Sbjct: 1 gatggagaagcagggcacgtgcactactaactcatgcacacagagagggagacgcatttc 60
Query: 84 ttgct-------cgagttatgactcttacctactatagattttgttggcctcagtgagtt 136
||||| ||||||| |||||||||||||||| ||||||||| || |||||||||
Sbjct: 61 ttgctggagttacgagttacgactcttacctactattgattttgttagctccagtgagtt 120
Query: 137 agttcttcatgtgcctgtcttccccatc 164
|||| |||||||||||||||||| ||||
Sbjct: 121 agttattcatgtgcctgtcttcctcatc 148
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 95.6 bits (48), Expect = 2e-19
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 16 gtgagcaagatggagaagcagggcacgtgcattactaactcatgcata 63
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgagcaagatggagaagcagggcacgtgcattactaactcatgcata 48
Score = 61.9 bits (31), Expect = 3e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 134 gttagttcttcatgtgcctgtcttccccatcatga 168
|||||||||||||||||| ||||||||||||||||
Sbjct: 86 gttagttcttcatgtgcccgtcttccccatcatga 120
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 89.7 bits (45), Expect = 1e-17
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 17 tgagcaagatggagaagcagggcacgtgcattactaactcatgca 61
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactaactcatgca 46
Score = 67.9 bits (34), Expect = 5e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 131 tgagttagttcttcatgtgcctgtcttccccatcatga 168
||||||||||||||||||||| ||||||||||||||||
Sbjct: 74 tgagttagttcttcatgtgcccgtcttccccatcatga 111
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 87.7 bits (44), Expect = 5e-17
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 18 gagcaagatggagaagcagggcacgtgcattactaactcatgca 61
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagcaagatggagaagcagggcacgtgcattactaactcatgca 46
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 131 tgagttagttcttcatgtgcctgtcttccccatcatga 168
|||||||||| |||||||||| |||||||||||||||
Sbjct: 105 tgagttagtttttcatgtgcccatcttccccatcatga 142
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 81.8 bits (41), Expect = 3e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 17 tgagcaagatggagaagcagggcacgtgcattactaactcatgca 61
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcatgca 46
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 132 gagttagttcttcatgtgcctgtcttccccatcatga 168
||||| |||||||||||||| |||||||||||||||
Sbjct: 120 gagttggttcttcatgtgcccctcttccccatcatga 156
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 75.8 bits (38), Expect = 2e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 17 tgagcaagatggagaagcagggcacgtgcattactaactcat 58
|||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 131 tgagttagttcttcatgtgcctgtcttccccatcatga 168
||||||||||||||||||||| ||||| |||||||||
Sbjct: 130 tgagttagttcttcatgtgcccatcttcaccatcatga 167
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 75.8 bits (38), Expect = 2e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 17 tgagcaagatggagaagcagggcacgtgcattactaactcat 58
|||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 131 tgagttagttcttcatgtgcctgtcttccccatcatga 168
||||||||||||||||||||| ||||| |||||||||
Sbjct: 129 tgagttagttcttcatgtgcccatcttcaccatcatga 166
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 75.8 bits (38), Expect = 2e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 17 tgagcaagatggagaagcagggcacgtgcattactaactcat 58
|||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 131 tgagttagttcttcatgtgcctgtcttccccatcatga 168
||||||||||||||||||||| ||||| |||||||||
Sbjct: 128 tgagttagttcttcatgtgcccatcttcaccatcatga 165
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 21 caagatggagaagcagggcacgtgcattactaactcatg 59
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatactaactcatg 44
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 131 tgagttagttcttcatgtgcctgtcttccccatcatga 168
||||||||||||||||||||| |||||||||||||||
Sbjct: 112 tgagttagttcttcatgtgcccctcttccccatcatga 149
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 69.9 bits (35), Expect = 1e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 17 tgagcaagatggagaagcagggcacgtgcattactaactcatg 59
|||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcaacactaactcatg 44
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 128 cagtgagttagttcttcatgtgcctgtcttccccatcatga 168
|||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 246 cagtaagttagtacttcatgtgcccctcttccccatcatga 286
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 20 gcaagatggagaagcagggcacgtgcattacta 52
|||||||||||||||||||||||||||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattacta 37
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 63.9 bits (32), Expect = 7e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 20 gcaagatggagaagcagggcacgtgcattact 51
||||||||||||||||||||||||||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattact 36
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 21 caagatggagaagcagggcacgtgcattactaactcatg 59
|||||||||||||||||||||||||| | ||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatgctaactcatg 44
Score = 58.0 bits (29), Expect = 5e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 128 cagtgagttagttcttcatgtgcctgtcttccccatcatga 168
|||||||||||| ||||||||||| |||||||||||||||
Sbjct: 251 cagtgagttagtgcttcatgtgcccctcttccccatcatga 291
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 19 agcaagatggagaagcagggcacgtgcattactaactcat 58
|||| ||||||||||||||||||||||| | |||||||||
Sbjct: 4 agcatgatggagaagcagggcacgtgcaatgctaactcat 43
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 24 gatggagaagcagggcacgtgcattac 50
|||||||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgcattac 35
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
(sorghum)
Length = 146
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcattac 50
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcattac 50
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 gatggagaagcagggcacgtgca 46
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
Japonica Group
Length = 180
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcatt 48
|||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcatt 33
>RF00647;MIR164;EU548763.1/160-261 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 gatggagaagcagggcacgtgc 45
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;ABXC01006220.1/150732-150882 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcat 47
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcat 47
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
Indica Group
Length = 142
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcat 47
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
