miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00704;MIR397;EF148834.1/45-164 3695:Populus trichocarpa x Populus
deltoides
Length = 120
Score = 170 bits (86), Expect = 3e-42
Identities = 112/120 (93%), Gaps = 3/120 (2%)
Strand = Plus / Plus
Query: 12 tggagaaccatcattgagtgcagcgttgatgaaatcctacattttgtgctcttaaactgt 71
||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct: 1 tggagaaacatcattgagtgcagcgttgatgaaatcctacattttgtgttattaaattgt 60
Query: 72 taccaaccctttat---ccatggcatcatttcaccagcgctgcattcaatcatgtttttc 128
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taccaaccctttatggggcatggcatcatttcaccagcgctgcattcaatcatgtttttc 120
>RF00704;MIR397;AARH01002083.1/50091-50204 3694:Populus trichocarpa
Length = 114
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 93 atcatttcaccagcgctgcattcaatcatgtttttc 128
||||||||||||||||||||||||| ||||||||||
Sbjct: 79 atcatttcaccagcgctgcattcaaccatgtttttc 114
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 cattgagtgcagcgttgatgaaat 46
||||||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatgaaat 35
>RF00704;MIR397;ABIM01007603.1/10199-10104 3649:Carica papaya
(papaya)
Length = 96
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 tggagaaccatcattgagtgcagcgttgatga 43
||||||| ||||||||||||||||||||||||
Sbjct: 1 tggagaaacatcattgagtgcagcgttgatga 32
>RF00704;MIR397;CAAP02007812.1/4570-4691 29760:Vitis vinifera
Length = 122
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 catcattgagtgcagcgttgatgaaa 45
||||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaaa 34
>RF00704;MIR397;AP003766.3/37038-37149 39947:Oryza sativa Japonica
Group
Length = 112
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 catcattgagtgcagcgttgatgaa 44
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>RF00704;MIR397;ABXC01002436.1/11519-11410 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 catcattgagtgcagcgttgatga 43
||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatga 32
>RF00704;MIR397;AC189186.2/40150-40047 51351:Brassica rapa subsp.
pekinensis
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 catcattgagtgcagcgttgatg 42
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>RF00704;MIR397;AC012392.1/95144-95040 3702:Arabidopsis thaliana
(thale cress)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 catcattgagtgcagcgttgatg 42
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>RF00704;MIR397;BABK01000209.1/917-1021 34305:Lotus japonicus
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 24 attgagtgcagcgttgatgaaatcct 49
||||||||||||||||||||| ||||
Sbjct: 13 attgagtgcagcgttgatgaagtcct 38
