miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01059;mir-598;AASC02011962.1/704-627 6500:Aplysia californica
(California sea hare)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 atgatcatcatcatcatcttcatc 34
||||||||||||||||||||||||
Sbjct: 46 atgatcatcatcatcatcttcatc 23
>RF01059;mir-598;ABRM01014404.1/15168-15236 6085:Hydra
magnipapillata
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 atgatcatcatcatcatcttcatctaca 38
|||||||||||||||||| |||||||||
Sbjct: 42 atgatcatcatcatcatcatcatctaca 69
>RF01059;mir-598;AASC02046688.1/2777-2848 6500:Aplysia californica
(California sea hare)
Length = 72
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 atgatcatcatcatcatcttcat 33
|||||||||||||||||||||||
Sbjct: 36 atgatcatcatcatcatcttcat 58
>RF01059;mir-598;ABRM01001395.1/10035-10130 6085:Hydra
magnipapillata
Length = 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 4 catcagtatgatcatcatcatcatcttcatc 34
||||| ||||||||||||||||||| |||||
Sbjct: 38 catcattatgatcatcatcatcatcatcatc 8
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 5 atcagtatgatcatcatcatcatcttcatc 34
|||| ||||||||||||||||||| |||||
Sbjct: 76 atcattatgatcatcatcatcatcatcatc 47
>RF01059;mir-598;AAWZ01014395.1/20997-21056 28377:Anolis
carolinensis (green anole)
Length = 60
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 atgatcatcatcatcatcttcatctac 37
|||||||||||||||||| ||||||||
Sbjct: 30 atgatcatcatcatcatcatcatctac 56
>RF01059;mir-598;AASC02006857.1/1556-1462 6500:Aplysia californica
(California sea hare)
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 5 atcagtatgatcatcatcatcatcttcatc 34
|||||||| ||||||||||||||| |||||
Sbjct: 43 atcagtatcatcatcatcatcatcatcatc 14
>RF01059;mir-598;AAGJ02135957.1/3048-3098 7668:Strongylocentrotus
purpuratus
Length = 51
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 atgatcatcatcatcatcttcatcta 36
|||||||||||||||||| |||||||
Sbjct: 24 atgatcatcatcatcatcatcatcta 49
