miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF01005;MIR530;AC182714.2/17566-17395 3694:Populus trichocarpa
          Length = 172

 Score =  276 bits (139), Expect = 1e-73
 Identities = 172/186 (92%), Gaps = 14/186 (7%)
 Strand = Plus / Plus

                                                                       
Query: 9   gccaatatgttgcctttatctgcatttgcacctgcatcttttgcgtttgttttgtttttg 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gccaatatgttgcctttatctgcatttgcacctgcatcttttgcgtttgttttgtttttg 60

                                                                       
Query: 69  actccacaaacaaaatcaagttctgtcgatacagtatgtgggacaattagatatagagtg 128
           ||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct: 61  actccacaaacaaaatcaagttctgtcgatacagtatgtgggacaa-------------- 106

                                                                       
Query: 129 ttagatatggaaactaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccat 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ttagatatggaaactaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccat 166

                 
Query: 189 tttggt 194
           ||||||
Sbjct: 167 tttggt 172




>RF01005;MIR530;AASG02002502.1/29848-29672 3988:Ricinus communis
          (castor bean)
          Length = 177

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 9  gccaatatgttgcctttatctgcatttgcacctgca 44
          ||||||||||||||||||||||||||||||||||||
Sbjct: 1  gccaatatgttgcctttatctgcatttgcacctgca 36



 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 158 aggtgcaggtgcaagtgcaggtgaatgccattttggt 194
           |||||||||||  ||||||||||||||||||||||||
Sbjct: 141 aggtgcaggtgtgagtgcaggtgaatgccattttggt 177




>RF01005;MIR530;AARH01003925.1/6653-6796 3694:Populus trichocarpa
          Length = 144

 Score = 63.9 bits (32), Expect = 8e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 9  gccaatatgttgcctttatctgcatttgcacctgca 44
          ||||| ||||||||||||||||||||||||||||||
Sbjct: 1  gccaacatgttgcctttatctgcatttgcacctgca 36



 Score = 63.9 bits (32), Expect = 8e-10
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 155 ttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 194
           |||||||||||||||| ||||||||||||||||| |||||
Sbjct: 105 ttgaggtgcaggtgcaggtgcaggtgaatgccatgttggt 144




>RF01005;MIR530;BABK01011395.1/470-304 34305:Lotus japonicus
          Length = 167

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 35/36 (97%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                              
Query: 9  gccaatatgttgcctttatctgcatttgcacctgca 44
          ||||||||||| ||||||||||||||||||||||||
Sbjct: 1  gccaatatgtt-cctttatctgcatttgcacctgca 35




>RF01005;MIR530;ABIM01000670.1/18536-18381 3649:Carica papaya
          (papaya)
          Length = 156

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 15 atgttgcctttatctgcatttgcacctgca 44
          ||||| ||||||||||||||||||||||||
Sbjct: 7  atgtttcctttatctgcatttgcacctgca 36




>RF01005;MIR530;BABK01011395.1/314-467 34305:Lotus japonicus
          Length = 154

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 32/33 (96%), Gaps = 1/33 (3%)
 Strand = Plus / Minus

                                            
Query: 12  aatatgttgcctttatctgcatttgcacctgca 44
           |||||||| ||||||||||||||||||||||||
Sbjct: 154 aatatgtt-cctttatctgcatttgcacctgca 123




>RF01005;MIR530;CAAP02000356.1/124211-124051 29760:Vitis vinifera
          Length = 161

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 gcctttatctgcatttgcacctgca 44
          |||||||||||||||||||||||||
Sbjct: 12 gcctttatctgcatttgcacctgca 36




>RF01005;MIR530;CAAP02000018.1/279657-279483 29760:Vitis vinifera
          Length = 175

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 23 tttatctgcatttgcacctgcatctttt 50
          |||||||||||||||||||||| |||||
Sbjct: 11 tttatctgcatttgcacctgcacctttt 38




>RF01005;MIR530;AASG02012391.1/1028-920 3988:Ricinus communis
          (castor bean)
          Length = 109

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 23 tttatctgcatttgcacctgca 44
          ||||||||||||||||||||||
Sbjct: 16 tttatctgcatttgcacctgca 37