miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 34 gttgtactaaggttgagacatttattttgggacgga 69
|||||||||||||||||||| |||||||||||||||
Sbjct: 59 gttgtactaaggttgagacacttattttgggacgga 94
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 35 ttgtactaaggttgagacatttattttgggacgga 69
||||||||||||||||||| |||||||||||||||
Sbjct: 46 ttgtactaaggttgagacacttattttgggacgga 12
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 31 aaggttgtactaaggttgagacatttattttgggacgga 69
|||||||||||||| |||||||| |||||||||||||||
Sbjct: 50 aaggttgtactaagcttgagacacttattttgggacgga 12
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 gttgagacatttattttgggacgga 69
|||||||||||||||||||||||||
Sbjct: 70 gttgagacatttattttgggacgga 94
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 34 gttgtactaaggttgagacatttattttgggacg 67
|||||||||||||||||||| |||||||||||||
Sbjct: 47 gttgtactaaggttgagacacttattttgggacg 14
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 34 gttgtactaaggttgagacatttattttgggacgga 69
||||||||||| |||||||| |||||||||||||||
Sbjct: 47 gttgtactaagcttgagacacttattttgggacgga 12
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 gttgagacatttattttgggacgga 69
|||||||||||||||||||||||||
Sbjct: 70 gttgagacatttattttgggacgga 94
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 29 ataaggttgtactaaggttgagacatttattttgggacgga 69
|||| ||||||||||| |||||| | |||||||||||||||
Sbjct: 52 ataaagttgtactaagtttgagaaagttattttgggacgga 12
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 50.1 bits (25), Expect = 5e-06
Identities = 55/64 (85%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 29 ataaggttgtactaaggttgagacatttattttgggacggacttattttggaacggatgg 88
|||| ||||||||||| |||||| | |||||||||||| | ||||||||| ||||| ||
Sbjct: 54 ataaagttgtactaagtttgagaaagttattttgggac--agttattttgggacggaggg 111
Query: 89 agta 92
||||
Sbjct: 112 agta 115
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 29 ataaggttgtactaaggttgagacatttattttgggacgga 69
|||| ||||||||||| |||||| | |||||||||||||||
Sbjct: 52 ataaagttgtactaagtttgagaaagttattttgggacgga 12
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 38 tactaaggttgagacatttattttgggacgga 69
|||||| ||||||||| |||||||||||||||
Sbjct: 43 tactaaagttgagacacttattttgggacgga 12
Score = 46.1 bits (23), Expect = 8e-05
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 35 ttgtactaaggttgagacatttattttgggacgga 69
|||||||||| |||||||| |||||||||||||||
Sbjct: 49 ttgtactaag-ttgagacacttattttgggacgga 82
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 34 gttgtactaaggttgagacatttattttgggacgga 69
||||||||| | |||||||| |||||||||||||||
Sbjct: 47 gttgtactaggcttgagacagttattttgggacgga 12
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 35 ttgtactaaggttgagacatttattttgggacgga 69
||||| |||| |||||||| |||||||||||||||
Sbjct: 60 ttgtattaagtttgagacagttattttgggacgga 94
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 35 ttgtactaaggttgagacatttattttgggacgga 69
|||||||||| || ||||| |||||||||||||||
Sbjct: 46 ttgtactaagcttaagacacttattttgggacgga 12
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 39 actaaggttgagacatttattttgggacgga 69
|||||| |||||||| |||||||||||||||
Sbjct: 42 actaagcttgagacacttattttgggacgga 12
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 7 gtagtgctccctccatcccaaaataa 32
||||| ||||||||||||||||||||
Sbjct: 104 gtagtactccctccatcccaaaataa 79
