miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 107 bits (54), Expect = 4e-23
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagatacggatgtacctaacaataaaa 80
||||||| || ||||||||||||||||||| |||||||||||| || ||| || |||||
Sbjct: 10 cctccgttccgaattacttgtcttagatttgtctagatacggagatatctagcactaaaa 69
Query: 81 cgtgtctagatacatccgtatctagccaaatctaagacagctaattcgggactgagggag 140
| |||||||||||||||||||||| |||||| |||||| ||||| || || |||||||
Sbjct: 70 tgagtctagatacatccgtatctagacaaatccaagacaagtaatttggaacggagggag 129
Query: 141 ta 142
||
Sbjct: 130 ta 131
Score = 69.9 bits (35), Expect = 1e-11
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagatacggatgta 67
||||||| |||||||||||||||| ||||| ||||||||||||||||
Sbjct: 126 cctccgttccaaattacttgtcttggatttgtctagatacggatgta 80
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 101 bits (51), Expect = 3e-21
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagatacggatgtacctaacaataaaa 80
|||| |||||||||| |||||||||||||| ||||||||| |||||| |||| | ||||
Sbjct: 126 cctctgtcccaaatttcttgtcttagatttgtctagatacagatgtatctaatacgaaaa 67
Query: 81 cgtgtctagatacatccgtatctagccaaatctaagaca 119
||| || ||||||||||||||||| |||||||||||||
Sbjct: 66 tgtgacttgatacatccgtatctagacaaatctaagaca 28
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagatacggatgta 67
|||| |||||||| | |||||||||||||| ||||||||||||||||
Sbjct: 10 cctcggtcccaaaattcttgtcttagatttgtctagatacggatgta 56
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 87 tagatacatccgtatctagccaaatctaagacagctaattcgggactgagggagta 142
|||||||||| |||||||| ||||||||||||| |||| ||||| |||||||||
Sbjct: 76 tagatacatctgtatctagacaaatctaagacaagaaatttgggacagagggagta 131
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 101 bits (51), Expect = 3e-21
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagatacggatgtacctaacaataaaa 80
||||||| ||||| | |||||||||||||| ||||||||||||||| |||| | |||||
Sbjct: 126 cctccgttccaaaattcttgtcttagatttgcctagatacggatgtatctaatactaaaa 67
Query: 81 cgtgtctagatacatccgtatctagccaaatctaagaca 119
|||| || ||||||||||||| ||| |||||||||||||
Sbjct: 66 cgtgacttgatacatccgtatttagacaaatctaagaca 28
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagatacggatgta 67
||||||||||||| | |||||||||||||| |||| |||||||||||
Sbjct: 10 cctccgtcccaaaattcttgtcttagatttgtctaaatacggatgta 56
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 87 tagatacatccgtatctagccaaatctaagaca 119
||||||||||||||||||| |||||||||||||
Sbjct: 76 tagatacatccgtatctaggcaaatctaagaca 108
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 99.6 bits (50), Expect = 1e-20
Identities = 104/122 (85%)
Strand = Plus / Minus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagatacggatgtacctaacaataaaa 80
||||||| |||||||||||||||| ||||| ||||||||| ||| | ||| || |||||
Sbjct: 126 cctccgttccaaattacttgtcttcgatttgtctagatacagatatgtctagcactaaaa 67
Query: 81 cgtgtctagatacatccgtatctagccaaatctaagacagctaattcgggactgagggag 140
| |||||||||||||||||||||| ||||| ||||||| |||||| | || |||||||
Sbjct: 66 tgagtctagatacatccgtatctagacaaatttaagacaagtaattcagaacggagggag 7
Query: 141 ta 142
||
Sbjct: 6 ta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 32 aattacttgtcttagatttctctagatacggatgta 67
|||||||||||||| |||| ||||||||||||||||
Sbjct: 21 aattacttgtcttaaatttgtctagatacggatgta 56
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 95.6 bits (48), Expect = 2e-19
Identities = 87/100 (87%)
Strand = Plus / Minus
Query: 19 tacctccgtcccaaattacttgtcttagatttctctagatacggatgtacctaacaataa 78
||||||||||||||| | ||||||| ||||| |||||||||||||||| |||||| |||
Sbjct: 128 tacctccgtcccaaaattcttgtctaggatttatctagatacggatgtatctaacactaa 69
Query: 79 aacgtgtctagatacatccgtatctagccaaatctaagac 118
|||||| |||||||||||| ||| ||| |||| ||||||
Sbjct: 68 aacgtgactagatacatccatatttagagaaatttaagac 29
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 85.7 bits (43), Expect = 2e-16
Identities = 85/99 (85%)
Strand = Plus / Minus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagatacggatgtacctaacaataaaa 80
||||||||||||| | |||||||||||||| |||||||| ||||||| |||| | |||||
Sbjct: 126 cctccgtcccaaaattcttgtcttagatttgtctagatatggatgtatctaatactaaaa 67
Query: 81 cgtgtctagatacatccgtatctagccaaatctaagaca 119
|||| | ||||||||| ||| ||| ||||||||||||
Sbjct: 66 cgtgagttgatacatccctatttagaaaaatctaagaca 28
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 87 tagatacatccgtatctagccaaatctaagaca 119
||||||||||| ||||||| |||||||||||||
Sbjct: 76 tagatacatccatatctagacaaatctaagaca 108
Score = 44.1 bits (22), Expect = 6e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 26 gtcccaaattacttgtcttagatttctctagatacggatgta 67
|||||||| | |||||||||||||| |||| ||| |||||||
Sbjct: 15 gtcccaaaattcttgtcttagatttttctaaatagggatgta 56
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 79.8 bits (40), Expect = 1e-14
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 16 tattacctccgtcccaaattacttgtcttagatttctctagatacggatgtacctaacaa 75
|||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct: 100 tattacctccgtcccaaaaagcttgtcttagatttatctagatacggatgtatctaacac 41
Query: 76 taaa 79
||||
Sbjct: 40 taaa 37
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 87 tagatacatccgtatctagccaaatctaagaca 119
||||||||||||||||||| ||||||||||||
Sbjct: 45 tagatacatccgtatctagataaatctaagaca 77
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 79.8 bits (40), Expect = 1e-14
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagatacggatgtacctaacaataaaa 80
||||||||||||| | || ||||||||||| | |||||| | |||| |||||| |||||
Sbjct: 126 cctccgtcccaaaattctngtcttagatttgtttagatatgaatgtgtctaacactaaaa 67
Query: 81 cgtgtctagatacatccgtatctagccaaatctaagaca 119
| || |||||||||||||||| ||| |||||||| ||||
Sbjct: 66 catgactagatacatccgtatttagacaaatctatgaca 28
Score = 54.0 bits (27), Expect = 6e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagatacggatgta 67
||||||||||||| | |||||| ||||||| |||| |||||||||||
Sbjct: 10 cctccgtcccaaaattcttgtcatagatttgtctaaatacggatgta 56
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 77.8 bits (39), Expect = 4e-14
Identities = 105/127 (82%)
Strand = Plus / Minus
Query: 16 tattacctccgtcccaaattacttgtcttagatttctctagatacggatgtacctaacaa 75
|||| ||||| ||||||| | ||||||||| |||| | |||||||||||||| ||||||
Sbjct: 131 tattccctccatcccaaaattcttgtcttacatttgtttagatacggatgtatctaacac 72
Query: 76 taaaacgtgtctagatacatccgtatctagccaaatctaagacagctaattcgggactga 135
||||| || ||| |||||||| ||| ||| ||||| ||||||| | | || ||||| ||
Sbjct: 71 taaaatgtaactacatacatccatatttagacaaatttaagacaacaattttgggacgga 12
Query: 136 gggagta 142
|||||||
Sbjct: 11 gggagta 5
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 71.9 bits (36), Expect = 2e-12
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 16 tattacctccgtcccaaattacttgtcttagatttctctagatacggatgtacctaacaa 75
|||| ||||| ||||||| | ||||||||| |||| | |||||| |||||| ||||||
Sbjct: 5 tattccctccatcccaaaattcttgtcttacatttgtttagataaagatgtatctaacac 64
Query: 76 taaaacgtgtctagatacatccgtatctagccaaatctaagaca 119
||||| || |||||||||||||||| ||| ||||| |||||||
Sbjct: 65 taaaatgtaactagatacatccgtatttagacaaatttaagaca 108
Score = 54.0 bits (27), Expect = 6e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagatacggatgta 67
||||||||||||| | ||||||||| |||| |||| |||||||||||
Sbjct: 126 cctccgtcccaaaattcttgtcttaaatttgtctaaatacggatgta 80
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 61.9 bits (31), Expect = 2e-09
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagatacggatgtacctaacaataaaa 80
||||||||||||| | ||||| ||| ||| |||||||||||||||| |||| | ||||
Sbjct: 126 cctccgtcccaaaattcttgttgtagctttgtctagatacggatgtatctaatacaaaaa 67
Query: 81 cgtgtctagatacatccgtatctagccaaatctaagaca 119
|||| || ||||||| ||| | ||| ||||| |||||||
Sbjct: 66 cgtgacttgatacattcgtctttagacaaatttaagaca 28
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 54.0 bits (27), Expect = 6e-07
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagatacggatgtacctaacaataaaa 80
|||||||| |||| | ||||||||| |||| ||||||||| ||||| ||| | |||||
Sbjct: 10 cctccgtctcaaaattcttgtcttacatttgtctagatacatatgtatttaatactaaaa 69
Query: 81 cgtgtctagatacatccgtatctagccaaatctaagaca 119
|| || |||||||||||| ||| |||||||||||||
Sbjct: 70 tatgacttcatacatccgtatttagacaaatctaagaca 108
Score = 54.0 bits (27), Expect = 6e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagatacggatgta 67
||||| ||||||| | |||||||||||||| |||| |||||||||||
Sbjct: 126 cctccatcccaaaattcttgtcttagatttgtctaaatacggatgta 80
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 54.0 bits (27), Expect = 6e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagatacgga 63
||||||||||||| | |||||||||||||| | ||||||||||
Sbjct: 96 cctccgtcccaaaattcttgtcttagatttatttagatacgga 54
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 37 cttgtcttagatttctctagatacggatgt 66
|||||||||||||| |||||||||||||||
Sbjct: 25 cttgtcttagatttatctagatacggatgt 54
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagata 59
||||||||||||| | |||||||||||||| ||||||||
Sbjct: 10 cctccgtcccaaacttcttgtcttagatttgtctagata 48
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 77 aaaacgtgtctagatacatccgtatctagccaaatctaagaca 119
|||||||| ||| |||||| | ||||||| |||||||||||||
Sbjct: 70 aaaacgtgactacatacattcatatctagacaaatctaagaca 28
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 54.0 bits (27), Expect = 6e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 19 tacctccgtcccaaattacttgtcttagatttctctagatacggatgtacctaac 73
||||||||||||| | ||||||| |||||| |||||||||||||||| |||||
Sbjct: 8 tacctccgtcccagaaagcttgtctaagatttatctagatacggatgtatctaac 62
>RF00906;MIR1122;FJ394375.1/382-487 4568:Triticum monococcum
Length = 106
Score = 50.1 bits (25), Expect = 9e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 83 tgtctagatacatccgtatctagccaaatctaagacagctaattcgggactgagggagta 142
|||||||||||| | |||||||| ||||| |||| || |||| |||||| |||||||||
Sbjct: 43 tgtctagatacacctgtatctagacaaatataaggcaactaaatcgggatggagggagta 102
Query: 143 t 143
|
Sbjct: 103 t 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 16 tattacctccgtcccaaattacttgtcttagattt 50
|||||| |||||||||||||| |||||||| ||||
Sbjct: 5 tattacatccgtcccaaattagttgtcttacattt 39
>RF00906;MIR1122;FJ394373.1/383-480 4573:Aegilops speltoides
Length = 98
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 107 caaatctaagacagctaattcgggactgagggagtat 143
|||||||||| || |||||||||||| ||||||||||
Sbjct: 59 caaatctaaggcaactaattcgggacggagggagtat 95
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 tccgtcccaaattacttgtcttagattt 50
|||||||||||||| |||||||||||||
Sbjct: 12 tccgtcccaaattagttgtcttagattt 39
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 77 aaaacgtgtctagatacatccgtatctagccaaatctaagaca 119
|||||||| ||||||||| | ||||||| |||||||||||||
Sbjct: 70 aaaacgtgattagatacattcatatctagacaaatctaagaca 28
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagata 59
||||||||| ||| | |||||||||||||| ||||||||
Sbjct: 10 cctccgtcctaaaattcttgtcttagatttgtctagata 48
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 82/99 (82%), Gaps = 2/99 (2%)
Strand = Plus / Minus
Query: 22 ctccgtcccaaattacttgtcttagatttctctagatacggatgtacctaacaa-taaaa 80
|||||||||||| | ||||||||| ||| |||||| | ||||||| |||| | |||||
Sbjct: 125 ctccgtcccaaaattcttgtcttaaattg-tctagaaatggatgtatctaaatactaaaa 67
Query: 81 cgtgtctagatacatccgtatctagccaaatctaagaca 119
| || |||||||||| | ||| ||| |||||||||||||
Sbjct: 66 catgactagatacattcatatttagacaaatctaagaca 28
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 21 cctccgtcccaaattacttgtcttagatttctctagata 59
||||||||||||| | ||||||||| |||| ||||||||
Sbjct: 10 cctccgtcccaaaattcttgtcttacatttgtctagata 48
