miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF104384.1/242-122 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 121
Score = 170 bits (86), Expect = 3e-42
Identities = 110/118 (93%)
Strand = Plus / Plus
Query: 12 tactccctccgtccgaaaaagattgtctctcaaatggatgtatctagcaccaagttagtg 71
||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct: 1 tactccctccgtccgaaaaagcttgtccctccaatggatgtatctagcaccaagttagtg 60
Query: 72 ctagatacatccatttgaggcacaagcttgggacaagctttttcggacggagggagta 129
||||||||||||||||||| | |||||||||||||| |||| |||||||||||||||
Sbjct: 61 ctagatacatccatttgagaaagaagcttgggacaagtttttccggacggagggagta 118
Score = 83.8 bits (42), Expect = 6e-16
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 39 tctcaaatggatgtatctagcaccaagttagtgctagatacatccatttgaggcacaagc 98
||||||||||||||||||||||| || || |||||||||||||||||| |||| ||||||
Sbjct: 80 tctcaaatggatgtatctagcactaacttggtgctagatacatccattggagggacaagc 21
Query: 99 tt 100
||
Sbjct: 20 tt 19
>RF00906;MIR1122;EU660894.1/7285-7161 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 125
Score = 163 bits (82), Expect = 8e-40
Identities = 113/122 (92%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 9 tagtactccctccgtccgaaaaagattgtctctcaaatggatgtatctagcaccaagtta 68
|||||||||||| ||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct: 2 tagtactccctctgtccgaaaa-gcttgtccctcaaatggatgtatctagcaccaagtta 60
Query: 69 gtgctagatacatccatttgaggcacaagcttgggacaagctttttcggacggagggagt 128
||||||||||||||||||| ||| ||||||||||||||||||||||| ||| |||| |||
Sbjct: 61 gtgctagatacatccatttaagggacaagcttgggacaagctttttcagacagaggaagt 120
Query: 129 at 130
||
Sbjct: 121 at 122
Score = 85.7 bits (43), Expect = 1e-16
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 34 ttgtctctcaaatggatgtatctagcaccaagttagtgctagatacatccatttgaggca 93
||||| || ||||||||||||||||||| || || ||||||||||||||||||||||| |
Sbjct: 88 ttgtcccttaaatggatgtatctagcactaacttggtgctagatacatccatttgaggga 29
Query: 94 caagctt 100
|||||||
Sbjct: 28 caagctt 22
>RF00906;MIR1122;AM932682.1/92777-92652 4565:Triticum aestivum
(bread wheat)
Length = 126
Score = 133 bits (67), Expect = 7e-31
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 20 ccgtccgaaaaagattgtctctcaaatggatgtatctagcaccaagttagtgctagatac 79
||||||||||||| | ||| ||||||||||||||||||||| |||||||||||| ||||
Sbjct: 13 ccgtccgaaaaagctcgtccctcaaatggatgtatctagcataaagttagtgctaaatac 72
Query: 80 atccatttgaggcacaagcttgggacaagctttttcggacggagggagtat 130
||||||||||| ||||||||| |||||| |||||| ||||||||||||||
Sbjct: 73 atccatttgagagacaagcttgtgacaagttttttccgacggagggagtat 123
Score = 77.8 bits (39), Expect = 4e-14
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 34 ttgtctctcaaatggatgtatctagcaccaagttagtgctagatacatccatttgaggca 93
||||||||||||||||||||| |||||| || || |||||||||||||||||||||| |
Sbjct: 89 ttgtctctcaaatggatgtatttagcactaactttatgctagatacatccatttgaggga 30
Query: 94 caagctt 100
| |||||
Sbjct: 29 cgagctt 23
>RF00906;MIR1122;AY951945.1/96570-96695 4568:Triticum monococcum
Length = 126
Score = 119 bits (60), Expect = 1e-26
Identities = 84/92 (91%)
Strand = Plus / Minus
Query: 16 ccctccgtccgaaaaagattgtctctcaaatggatgtatctagcaccaagttagtgctag 75
|||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 118 ccctccgtccgaaaaaccctgtccctcaaatggatgtatctagcaccaagttactgctag 59
Query: 76 atacatccatttgaggcacaagcttgggacaa 107
|||||||||||| ||| ||||| |||||||||
Sbjct: 58 atacatccatttaaggaacaagattgggacaa 27
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 43 aaatggatgtatctagcaccaagttagtgctagatacatccatttgagg 91
|||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 47 aaatggatgtatctagcagtaacttggtgctagatacatccatttgagg 95
>RF00906;MIR1122;AY146588.1/242790-242666 4568:Triticum monococcum
Length = 125
Score = 109 bits (55), Expect = 1e-23
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 15 tccctccgtccgaaaaagattgtctctcaaatggatgtatctagcaccaagttagtgcta 74
|||||| |||| |||||| ||||| ||||||| ||||||||||||| | |||||||||||
Sbjct: 7 tccctctgtccaaaaaagtttgtccctcaaatagatgtatctagcatctagttagtgcta 66
Query: 75 gatacatccatttgaggcacaagcttgggacaagctttttcggacggagggagta 129
|||||| |||||||| |||||| ||||| ||| |||||||||| |||||||||
Sbjct: 67 catacatttatttgaggaacaagcctgggataagatttttcggacagagggagta 121
>RF00906;MIR1122;AF446141.1/33072-33186 37682:Aegilops tauschii
Length = 115
Score = 85.7 bits (43), Expect = 1e-16
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 12 tactccctccgtccgaaaaagattgtctctcaaatggatgtatctagcaccaagttagtg 71
||||||||| |||||||||| ||| | | ||||||||||| ||||||||||||||||||
Sbjct: 111 tactccctcagtccgaaaaaacttgccccacaaatggatgtgtctagcaccaagttagtg 52
Query: 72 ctagatacatccatttgag 90
|||||||||| |||||||
Sbjct: 51 ttagatacatctatttgag 33
Score = 73.8 bits (37), Expect = 5e-13
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 12 tactccctccgtccgaaaaagattgtctctcaaatggatgtatctagcaccaagttagtg 71
||||||||| || | |||||| ||||||||||||| |||||||||| ||| || || |||
Sbjct: 5 tactccctctgttcaaaaaagtttgtctctcaaatagatgtatctaacactaacttggtg 64
Query: 72 ctagatacatccatttg 88
||||| |||||||||||
Sbjct: 65 ctagacacatccatttg 81
>RF00906;MIR1122;AF525764.1/4346-4235 200361:Aegilops tauschii
subsp. strangulata
Length = 112
Score = 75.8 bits (38), Expect = 1e-13
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 69 gtgctagatacatccatttgaggcacaagcttgggacaagctttttcggacggagggagt 128
||||||||||| |||||||||| ||||| | |||||||| |||||||||||||||||||
Sbjct: 48 gtgctagatacgtccatttgagaaacaagttagggacaagatttttcggacggagggagt 107
Query: 129 at 130
||
Sbjct: 108 at 109
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 34 ttgtctctcaaatggatgtatctagcaccaa 64
|||| ||||||||||| ||||||||||||||
Sbjct: 75 ttgtttctcaaatggacgtatctagcaccaa 45
>RF00906;MIR1122;AF446141.1/45135-45243 37682:Aegilops tauschii
Length = 109
Score = 58.0 bits (29), Expect = 3e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 12 tactccctccgtccgaaaaagattgtctctcaaatggatgtatctagca 60
|||||||||||||| ||||| ||| | |||||||||||||||||||||
Sbjct: 5 tactccctccgtccctaaaagtttgaccctcaaatggatgtatctagca 53
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 70 tgctagatacatccatttgagg 91
||||||||||||||||||||||
Sbjct: 53 tgctagatacatccatttgagg 32
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tagtactccctccgtccgaaaa 30
||||||||||||||||||||||
Sbjct: 125 tagtactccctccgtccgaaaa 104
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 111 ttttcggacggagggagtatgt 132
||||||||||||||||||||||
Sbjct: 113 ttttcggacggagggagtatgt 134
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tagtactccctccgtccgaaaa 30
||||||||||||||||||||||
Sbjct: 2 tagtactccctccgtccgaaaa 23
>RF00906;MIR1122;DQ355219.1/57-171 4588:Lophopyrum elongatum
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 68 agtgctagatacatccatttga 89
||||||||||||||||||||||
Sbjct: 55 agtgctagatacatccatttga 34
