miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY663391.1/33436-33528 4571:Triticum turgidum
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 13 tactcactccgtcccatgatgtaagacgttttt 45
||||| ||||||||||| |||||||||||||||
Sbjct: 89 tactccctccgtcccataatgtaagacgttttt 57
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 13 tactcactccgtcccatgatgtaagacgttttt 45
||||| ||||||||||| |||||||||||||||
Sbjct: 5 tactccctccgtcccataatgtaagacgttttt 37
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 12 ctactcactccgtcccatgatgtaagacgttttt 45
|||||| ||||||||||| ||||| |||||||||
Sbjct: 108 ctactccctccgtcccataatgtaggacgttttt 75
>RF00906;MIR1122;EF397435.1/125-217 4588:Lophopyrum elongatum
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 20 tccgtcccatgatgtaagacgtttttgcaagct 52
|||||||||| |||||| |||||||||||||||
Sbjct: 12 tccgtcccataatgtaatacgtttttgcaagct 44
>RF00906;MIR1122;AB298184.1/14323-14229 4565:Triticum aestivum
(bread wheat)
Length = 95
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 19 ctccgtcccatgatgtaagacgttttt 45
||||||||||| |||||||||||||||
Sbjct: 85 ctccgtcccataatgtaagacgttttt 59
>RF00906;MIR1122;EU187471.1/291-190 40247:Dasypyrum villosum
Length = 102
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 19 ctccgtcccatgatgtaagacgttttt 45
||||||||||| |||||||||||||||
Sbjct: 11 ctccgtcccataatgtaagacgttttt 37
>RF00906;MIR1122;DQ247823.1/803-901 4487:Aegilops searsii
Length = 99
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 19 ctccgtcccatgatgtaagacgttttt 45
||||||||||| |||||||||||||||
Sbjct: 90 ctccgtcccataatgtaagacgttttt 64
>RF00906;MIR1122;FJ436986.1/65665-65790 37682:Aegilops tauschii
Length = 126
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 19 ctccgtcccatgatgtaagacgttttt 45
||||||||||| |||||||||||||||
Sbjct: 61 ctccgtcccataatgtaagacgttttt 35
>RF00906;MIR1122;DQ247832.1/803-901 4487:Aegilops searsii
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 19 ctccgtcccatgatgtaagacgtttt 44
||||||||||| ||||||||||||||
Sbjct: 90 ctccgtcccataatgtaagacgtttt 65
>RF00906;MIR1122;EU626553.1/80596-80503 4572:Triticum urartu
Length = 94
Score = 42.1 bits (21), Expect = 0.001
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 13 tactcactccgtcccatgatgtaagacgttttt 45
||||| ||||||||||| ||||||||| |||||
Sbjct: 90 tactccctccgtcccataatgtaagacattttt 58
>RF00906;MIR1122;EF426564.1/124146-124054 4571:Triticum turgidum
Length = 93
Score = 42.1 bits (21), Expect = 0.001
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 13 tactcactccgtcccatgatgtaagacgttttt 45
||||| ||||||||||| |||||||| ||||||
Sbjct: 5 tactccctccgtcccataatgtaagaggttttt 37
>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 42.1 bits (21), Expect = 0.001
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 13 tactcactccgtcccatgatgtaagacgttttt 45
||||| ||||||||||| |||||||||| ||||
Sbjct: 5 tactccctccgtcccataatgtaagacgctttt 37
>RF00906;MIR1122;AAAA02024400.1/2538-2637 39946:Oryza sativa Indica
Group
Length = 100
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 51 ctgggacggagggagtacatg 71
|||||||||||||||||||||
Sbjct: 80 ctgggacggagggagtacatg 100
