miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 44 gatctaaacaatcttgtatttctttacagagggagta 80
||||||||| ||||| |||||||||||||||||||||
Sbjct: 41 gatctaaacgatcttatatttctttacagagggagta 5
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 44 gatctaaacaatcttgtatttctttacagagggagta 80
|||||||||| |||| |||||||||||||||||||||
Sbjct: 51 gatctaaacactcttatatttctttacagagggagta 87
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 55/64 (85%), Gaps = 4/64 (6%)
Strand = Plus / Minus
Query: 21 gtaaagaaacataagattgtttagatc----taaacaatcttgtatttctttacagaggg 76
||||||||| ||||||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 68 gtaaagaaatataagatcatttagatcactataaacgatcttatatttctttacagaggg 9
Query: 77 agta 80
||||
Sbjct: 8 agta 5
Score = 50.1 bits (25), Expect = 5e-06
Identities = 53/62 (85%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 21 gtaaagaaacataagattgttta----gatctaaacaatcttgtatttctttacagaggg 76
||||||||| ||||||| ||||| |||||||| ||||| |||||||||||||||||
Sbjct: 15 gtaaagaaatataagatcgtttatagtgatctaaatgatcttatatttctttacagaggg 74
Query: 77 ag 78
||
Sbjct: 75 ag 76
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 45 atctaaacaatcttgtatttctttacagagggagtagt 82
||||||||| |||| ||||||||||| |||||||||||
Sbjct: 54 atctaaacactcttatatttctttacggagggagtagt 91
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 44 gatctaaacaatcttgtatttctttacagagggagtagtaa 84
||||||||| |||| |||||||||||||||| ||||||||
Sbjct: 41 gatctaaacgctcttatatttctttacagaggtagtagtaa 1
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 44 gatctaaacaatcttgtatttctttacagagggagta 80
||||||||| |||| |||||||||||||||||||||
Sbjct: 41 gatctaaacgctcttatatttctttacagagggagta 5
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 44 gatctaaacaatcttgtatttctttacagagggagta 80
||||||||| |||| |||||||||||||||||||||
Sbjct: 47 gatctaaacgctcttatatttctttacagagggagta 83
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 45 atctaaacaatcttgtatttctttacagagggagta 80
||||||| ||||| |||||||||||||||||||||
Sbjct: 54 atctaaatgatcttatatttctttacagagggagta 89
