miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 125 bits (63), Expect = 1e-28
Identities = 99/110 (90%), Gaps = 2/110 (1%)
Strand = Plus / Minus
Query: 12 agggagccagggaagaggcagtgcatgggaagagaccaaacatagtcatttgatgttttg 71
||||||||||||||||||||||||||||| |||||| ||| | |||| ||| |||||||
Sbjct: 112 agggagccagggaagaggcagtgcatgggtagagacaaaaaagagtcgtttaatgtttta 53
Query: 72 gtaaaaactcgatccatgctctgcttgttccctgtctctctctcgttacc 121
||||| ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 52 gtaaa--ctcaatccatgctctgcttgttccctgtctctctctcattacc 5
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 15 gagccagggaagaggcagtgcatgggaagag 45
|||||||||||||||||||||||||| ||||
Sbjct: 109 gagccagggaagaggcagtgcatgggtagag 79
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 16 agccagggaagaggcagtgcatgggaagag 45
||||||||||||||||||||||||| ||||
Sbjct: 101 agccagggaagaggcagtgcatgggtagag 72
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 13 gggagccagggaagaggcagtgcatggga 41
|||||||||||||||||||||||| ||||
Sbjct: 166 gggagccagggaagaggcagtgcagggga 138
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 gagccagggaagaggcagtgcatg 38
||||||||||||||||||||||||
Sbjct: 140 gagccagggaagaggcagtgcatg 117
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 14 ggagccagggaagaggcagtgcatggga 41
||||||||||||||||||||||| ||||
Sbjct: 165 ggagccagggaagaggcagtgcagggga 138
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 14 ggagccagggaagaggcagtgcatggga 41
||||||||||||||||||||||| ||||
Sbjct: 176 ggagccagggaagaggcagtgcagggga 149
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 14 ggagccagggaagaggcagtgcatggga 41
||||||||||||||||||||||| ||||
Sbjct: 167 ggagccagggaagaggcagtgcagggga 140
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 agccagggaagaggcagtgcatg 38
|||||||||||||||||||||||
Sbjct: 105 agccagggaagaggcagtgcatg 83
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 83 atccatgctctgcttgttccctgtct 108
||||||||||||| ||||||||||||
Sbjct: 43 atccatgctctgcatgttccctgtct 18
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 15 gagccagggaagaggcagtgca 36
||||||||||||||||||||||
Sbjct: 107 gagccagggaagaggcagtgca 86
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 16 agccagggaagaggcagtgcatgggaagag 45
||||||||||||||||||||| ||| ||||
Sbjct: 102 agccagggaagaggcagtgcaggggtagag 73
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 gccagggaagaggcagtgcatg 38
||||||||||||||||||||||
Sbjct: 118 gccagggaagaggcagtgcatg 97
