miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana (thale
           cress)
          Length = 85

 Score = 79.8 bits (40), Expect = 7e-15
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                       
Query: 17  tatgcctggctccctgtatgccatacactaagttcatcgaccatcggcgacctcggtgga 76
           |||||||||||||||||||||||||  || ||  ||||||  ||||  |||||| |||||
Sbjct: 2   tatgcctggctccctgtatgccatatgctgagcccatcgagtatcgatgacctccgtgga 61

                                   
Query: 77  tggcgtatgaggagccaagcatat 100
           ||||||||||||||||| ||||||
Sbjct: 62  tggcgtatgaggagccatgcatat 85




>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
           (barrel medic)
          Length = 86

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 72  gtggatggcgtatgaggagccaagcatat 100
           |||||||||||||||||||||||||||||
Sbjct: 58  gtggatggcgtatgaggagccaagcatat 86




>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
          Length = 86

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 73  tggatggcgtatgaggagccaagcatat 100
           ||||||||||||||||||||||||||||
Sbjct: 59  tggatggcgtatgaggagccaagcatat 86



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 tgcctggctccctgtatgccat 40
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccat 25




>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus trichocarpa
          Length = 86

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 67  cctcggtggatggcgtatgaggagccaagcatat 100
           |||| |||||||||||||||||||||| ||||||
Sbjct: 53  cctccgtggatggcgtatgaggagccatgcatat 86



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 tgcctggctccctgtatgccat 40
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccat 25




>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
          (papaya)
          Length = 85

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 67 cctcggtggatggcgtatgaggagccaagcata 99
          |||| |||||||||||||||||||||| |||||
Sbjct: 52 cctccgtggatggcgtatgaggagccatgcata 84




>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
          Length = 89

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 atatgcctggctccctgtatgccat 40
          |||||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgccat 25



 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 76  atggcgtatgaggagccaagcatat 100
           |||||||||||||||||||||||||
Sbjct: 65  atggcgtatgaggagccaagcatat 89




>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
          Length = 86

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 atatgcctggctccctgtatgccat 40
          |||||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgccat 25



 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 72  gtggatggcgtatgaggagccaagcatat 100
           |||||||||||||||||||||| ||||||
Sbjct: 58  gtggatggcgtatgaggagccatgcatat 86




>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
          Length = 85

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 atatgcctggctccctgtatgcca 39
          ||||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgcca 24




>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
          (sorghum)
          Length = 106

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 atatgcctggctccctgtatgcca 39
          ||||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgcca 24




>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
          (sorghum)
          Length = 101

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 atatgcctggctccctgtatgcca 39
          ||||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgcca 24




>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
          Indica Group
          Length = 136

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 atatgcctggctccctgtatgcca 39
          ||||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgcca 24




>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
          (papaya)
          Length = 86

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 18 atgcctggctccctgtatgccat 40
          |||||||||||||||||||||||
Sbjct: 3  atgcctggctccctgtatgccat 25




>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
          (papaya)
          Length = 88

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 17 tatgcctggctccctgtatgcca 39
          |||||||||||||||||||||||
Sbjct: 2  tatgcctggctccctgtatgcca 24




>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
          (thale cress)
          Length = 87

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 17 tatgcctggctccctgtatgcca 39
          |||||||||||||||||||||||
Sbjct: 2  tatgcctggctccctgtatgcca 24




>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
          trichocarpa
          Length = 90

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 17 tatgcctggctccctgtatgcca 39
          |||||||||||||||||||||||
Sbjct: 2  tatgcctggctccctgtatgcca 24




>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
          Length = 89

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 17 tatgcctggctccctgtatgcca 39
          |||||||||||||||||||||||
Sbjct: 1  tatgcctggctccctgtatgcca 23




>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
          (castor bean)
          Length = 90

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 17 tatgcctggctccctgtatgcca 39
          |||||||||||||||||||||||
Sbjct: 2  tatgcctggctccctgtatgcca 24




>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
          Length = 86

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 18 atgcctggctccctgtatgccat 40
          |||||||||||||||||||||||
Sbjct: 3  atgcctggctccctgtatgccat 25




>RF00247;mir-160;AY551220.1/23-122 4530:Oryza sativa (rice)
          Length = 100

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 atatgcctggctccctgtatgcc 38
          |||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgcc 23




>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
          pekinensis
          Length = 88

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 18 atgcctggctccctgtatgcca 39
          ||||||||||||||||||||||
Sbjct: 3  atgcctggctccctgtatgcca 24




>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
          Length = 87

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 18 atgcctggctccctgtatgcca 39
          ||||||||||||||||||||||
Sbjct: 3  atgcctggctccctgtatgcca 24




>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
          (castor bean)
          Length = 86

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 tgcctggctccctgtatgccat 40
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccat 25




>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
          (barrel medic)
          Length = 86

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 tgcctggctccctgtatgccat 40
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccat 25