miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC021043.4/36317-36195 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 129 bits (65), Expect = 7e-30
Identities = 94/103 (91%), Gaps = 3/103 (2%)
Strand = Plus / Plus
Query: 3 aagatctctattggcaggaaaccattacttagatctttgcatctctctgtgcattgattt 62
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct: 17 aagatctctattggcaggaaaccattacttagatctttgcatctctttatgcattgcttt 76
Query: 63 ---gtagtgagttctctgccaaaggagatttgcccggtaattc 102
||||||||| ||||||||||||||||||||| |||||||
Sbjct: 77 taattagtgagttatctgccaaaggagatttgccctgtaattc 119
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 69.9 bits (35), Expect = 6e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 60 tttgtagtgagttctctgccaaaggagatttgcccggtaattc 102
||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 72 tttgtggtgagctctctgccaaaggagatttgcccggtaattc 114
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 65 agtgagttctctgccaaaggagatttgcccggtaattc 102
|||| |||| |||||||||||||||||||| |||||||
Sbjct: 76 agtgtgttccctgccaaaggagatttgcccagtaattc 113
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 73 ctctgccaaaggagatttgcccggtaattc 102
|||||||||||||||||||||||| |||||
Sbjct: 83 ctctgccaaaggagatttgcccggcaattc 112
>RF00445;mir-399;ABIM01002717.1/16187-16280 3649:Carica papaya
(papaya)
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 75 ctgccaaaggagatttgcccggtaattc 102
|||||||||||||||||||||| |||||
Sbjct: 63 ctgccaaaggagatttgcccggcaattc 90
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 75 ctgccaaaggagatttgcccggtaattc 102
|||||||||||||||||||||| |||||
Sbjct: 78 ctgccaaaggagatttgcccggcaattc 105
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 ttctctgccaaaggagatttgccc 94
||||||||||||||||||||||||
Sbjct: 65 ttctctgccaaaggagatttgccc 88
>RF00445;mir-399;AARH01014738.1/2159-2280 3694:Populus trichocarpa
Length = 122
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 76 tgccaaaggagatttgcccggtaattc 102
||||||||||||||||||||| |||||
Sbjct: 92 tgccaaaggagatttgcccggcaattc 118
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 tctctgccaaaggagatttgccc 94
|||||||||||||||||||||||
Sbjct: 83 tctctgccaaaggagatttgccc 105
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ctctgccaaaggagatttgccc 94
||||||||||||||||||||||
Sbjct: 68 ctctgccaaaggagatttgccc 89
