miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa subsp.
pekinensis
Length = 92
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 72 aaaattaaaagcatgaacagatcgataaacctctgcatccagc 114
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 50 aaaattaaaagcatgaacagatcgataaacctgtgcatccagc 92
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 tgctggaggcagcggttcatcgatctctt 37
||||||||||||||||| |||||||||||
Sbjct: 1 tgctggaggcagcggttgatcgatctctt 29
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 67.9 bits (34), Expect = 3e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 77 taaaagcatgaacagatcgataaacctctgcatccagc 114
|||||||||||| |||||||||||||||||||||||||
Sbjct: 51 taaaagcatgaatagatcgataaacctctgcatccagc 88
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 10 gctggaggcagcggttcatcgatctcttcctg 41
||||||||||||||||||||||||||||||||
Sbjct: 2 gctggaggcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatctcttcctg 41
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 91 gatcgataaacctctgcatccagc 114
||||||||||||||||||||||||
Sbjct: 68 gatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatctcttcctg 41
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 78 aaaagcatgaacagatcgataaacctctgcatccagc 114
|||| ||||||| ||||||||||||||||||||||||
Sbjct: 55 aaaaacatgaaccgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatctcttcctg 41
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 71 aaaaattaaaagcatgaacagatcgataaacctctgcatccagc 114
|||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct: 53 aaaaataaaacgcatgaatcgatcgataaacctctgcatccagc 96
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatctcttcctga 42
|||||||||||||||||||||||| |||||||
Sbjct: 3 ctggaggcagcggttcatcgatcttttcctga 34
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 86 gaacagatcgataaacctctgcatccag 113
|||| |||||||||||||||||||||||
Sbjct: 63 gaaccgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatctcttcctga 42
||||| ||||||||||||||||||||||||||
Sbjct: 3 ctggatgcagcggttcatcgatctcttcctga 34
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 tcgataaacctctgcatccagc 114
||||||||||||||||||||||
Sbjct: 67 tcgataaacctctgcatccagc 88
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 78 aaaagcatgaacagatcgataaacctctgcatccagc 114
||||||| ||| ||||||||||||||||||||||||
Sbjct: 55 aaaagcaagaatcgatcgataaacctctgcatccagc 91
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 gctggaggcagcggttcatcgatc 33
||||||||||||||||||||||||
Sbjct: 2 gctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 ctggaggcagcggttcatcgatctcttcctga 42
||||| |||||||||||||||||| |||||||
Sbjct: 3 ctggatgcagcggttcatcgatctgttcctga 34
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 tcgataaacctctgcatccagc 114
||||||||||||||||||||||
Sbjct: 69 tcgataaacctctgcatccagc 90
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 91 gatcgataaacctctgcatccagc 114
||||||||||||||||||||||||
Sbjct: 109 gatcgataaacctctgcatccagc 132
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 gatcgataaacctctgcatccag 113
|||||||||||||||||||||||
Sbjct: 135 gatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 gatcgataaacctctgcatccag 113
|||||||||||||||||||||||
Sbjct: 136 gatcgataaacctctgcatccag 158
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 tcgataaacctctgcatccagc 114
||||||||||||||||||||||
Sbjct: 112 tcgataaacctctgcatccagc 133
