miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;ABXC01002982.1/36897-37040 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 73.8 bits (37), Expect = 6e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 14 tgccatgcctttccacagctttcttgaacttcttctcctcc 54
||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 tgccatgcctttccacagctttcttgaacttctcctcctcc 41
Score = 69.9 bits (35), Expect = 9e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 102 aagaaggtcaagaaagctgtgggaagaaatgacat 136
|||||||||||||||||||||||||||||||||||
Sbjct: 110 aagaaggtcaagaaagctgtgggaagaaatgacat 144
>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
Length = 105
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 14 tgccatgcctttccacagctttcttgaacttcttctcc 51
|||||||| |||||||||||||||||||||||||||||
Sbjct: 1 tgccatgcttttccacagctttcttgaacttcttctcc 38
>RF00648;MIR396;AP008208.1/34306506-34306365 39947:Oryza sativa
Japonica Group
Length = 142
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 14 tgccatgcctttccacagctttcttgaacttct 46
|||||||||||||||||||||||||||||||||
Sbjct: 1 tgccatgcctttccacagctttcttgaacttct 33
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 101 gaagaaggtcaagaaagctgtgggaagaaatg 132
||||| ||||||||||||||||||||||||||
Sbjct: 107 gaagagggtcaagaaagctgtgggaagaaatg 138
>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
(castor bean)
Length = 133
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 17 catgcctttccacagctttcttgaacttcttct 49
||||| |||||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaacttcttct 36
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
trichocarpa
Length = 148
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 17 catgcctttccacagctttcttgaacttctt 47
||||| |||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaacttctt 34
>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 17 catgcctttccacagctttcttgaacttctt 47
||||| |||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaacttctt 34
>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
Length = 108
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 17 catgcctttccacagctttcttgaacttctt 47
||||| |||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaacttctt 34
>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
(papaya)
Length = 159
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 23 tttccacagctttcttgaacttctt 47
|||||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaacttctt 34
>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
trichocarpa
Length = 157
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 catgcctttccacagctttcttgaacttc 45
||||| |||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaacttc 32
>RF00648;MIR396;AACV01005603.1/23634-23775 39947:Oryza sativa
Japonica Group
Length = 142
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 tgccatgcctttccacagctttcttgaac 42
|||||||||||||||||||| ||||||||
Sbjct: 1 tgccatgcctttccacagctctcttgaac 29
>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
trichocarpa
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 14 tgccatgcctttccacagctttcttgaacttc 45
||||||| |||||||||||||||||||||||
Sbjct: 104 tgccatgtttttccacagctttcttgaacttc 73
>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
Length = 261
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tttccacagctttcttgaacttct 46
||||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaacttct 33
>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 catgcctttccacagctttcttgaact 43
||||| |||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana
(thale cress)
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 tttccacagctttcttgaactt 44
||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaactt 31
>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
Length = 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 tttccacagctttcttgaactt 44
||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaactt 31
>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
pine)
Length = 108
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 tttccacagctttcttgaactt 44
||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaactt 31
