miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;ABXC01002982.1/36897-37040 4558:Sorghum bicolor
          (sorghum)
          Length = 144

 Score = 73.8 bits (37), Expect = 6e-13
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                   
Query: 13 tgccatgcctttccacagctttcttgaacttcttctcctcc 53
          ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1  tgccatgcctttccacagctttcttgaacttctcctcctcc 41



 Score = 69.9 bits (35), Expect = 9e-12
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 101 aagaaggtcaagaaagctgtgggaagaaatgacat 135
           |||||||||||||||||||||||||||||||||||
Sbjct: 110 aagaaggtcaagaaagctgtgggaagaaatgacat 144




>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
          Length = 105

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 13 tgccatgcctttccacagctttcttgaacttcttctcc 50
          |||||||| |||||||||||||||||||||||||||||
Sbjct: 1  tgccatgcttttccacagctttcttgaacttcttctcc 38




>RF00648;MIR396;AP008208.1/34306506-34306365 39947:Oryza sativa
          Japonica Group
          Length = 142

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 13 tgccatgcctttccacagctttcttgaacttct 45
          |||||||||||||||||||||||||||||||||
Sbjct: 1  tgccatgcctttccacagctttcttgaacttct 33



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 100 gaagaaggtcaagaaagctgtgggaagaaatg 131
           ||||| ||||||||||||||||||||||||||
Sbjct: 107 gaagagggtcaagaaagctgtgggaagaaatg 138




>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
          (castor bean)
          Length = 133

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 16 catgcctttccacagctttcttgaacttcttct 48
          ||||| |||||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaacttcttct 36




>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
          trichocarpa
          Length = 148

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 16 catgcctttccacagctttcttgaacttctt 46
          ||||| |||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaacttctt 34




>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
          (barrel medic)
          Length = 104

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 16 catgcctttccacagctttcttgaacttctt 46
          ||||| |||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaacttctt 34




>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
          Length = 108

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 16 catgcctttccacagctttcttgaacttctt 46
          ||||| |||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaacttctt 34




>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
          (papaya)
          Length = 159

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 22 tttccacagctttcttgaacttctt 46
          |||||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaacttctt 34




>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
          trichocarpa
          Length = 157

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 16 catgcctttccacagctttcttgaacttc 44
          ||||| |||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaacttc 32




>RF00648;MIR396;AACV01005603.1/23634-23775 39947:Oryza sativa
          Japonica Group
          Length = 142

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 13 tgccatgcctttccacagctttcttgaac 41
          |||||||||||||||||||| ||||||||
Sbjct: 1  tgccatgcctttccacagctctcttgaac 29




>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
           trichocarpa
          Length = 105

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 13  tgccatgcctttccacagctttcttgaacttc 44
           |||||||  |||||||||||||||||||||||
Sbjct: 104 tgccatgtttttccacagctttcttgaacttc 73




>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
          Length = 261

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 22 tttccacagctttcttgaacttct 45
          ||||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaacttct 33




>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
          Length = 113

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 16 catgcctttccacagctttcttgaact 42
          ||||| |||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaact 30




>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana
          (thale cress)
          Length = 136

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tttccacagctttcttgaactt 43
          ||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaactt 31




>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
          Length = 87

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tttccacagctttcttgaactt 43
          ||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaactt 31




>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
          pine)
          Length = 108

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tttccacagctttcttgaactt 43
          ||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaactt 31