miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 230 bits (116), Expect = 4e-60
Identities = 124/127 (97%)
Strand = Plus / Plus
Query: 1 tgcaaggggtggtgacaagctagaggcagcaactgcatatcttgcaagaaaattggtttt 60
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaaggggcggtgacgagctagaggcagcaactgcatatcttgcaagaaaattggtttt 60
Query: 61 cgaaccataccgataattttcttgcangttgtgcagttgttgtctcaagcttgctgcctc 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 cgaaccataccgataattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 120
Query: 121 cctttgc 127
|||||||
Sbjct: 121 cctttgc 127
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 153 bits (77), Expect = 7e-37
Identities = 103/112 (91%)
Strand = Plus / Plus
Query: 16 caagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgata 75
|||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 16 caagctagagacagcaactgcatatcttgcaagaaaatcggttttatggccataccgatg 75
Query: 76 attttcttgcangttgtgcagttgttgtctcaagcttgctgcctccctttgc 127
||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 76 attttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgc 127
Score = 46.1 bits (23), Expect = 1e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 76 attttcttgcangttgtgcagttgttgtctcaagcttgctgcctcc 121
||||||||||| | | |||||||| |||||| ||||||| ||||||
Sbjct: 53 attttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 8
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 127 bits (64), Expect = 4e-29
Identities = 102/114 (89%), Gaps = 2/114 (1%)
Strand = Plus / Plus
Query: 16 caagctagaggcagcaactgcatatcttgcaagaaaa--ttggttttcgaaccataccga 73
|||||||||||||||||||||||| |||||||||||| | |||||| | ||||||
Sbjct: 16 caagctagaggcagcaactgcataccttgcaagaaaaaatcggttttgttgacgtaccga 75
Query: 74 taattttcttgcangttgtgcagttgttgtctcaagcttgctgcctccctttgc 127
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 129
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 85.7 bits (43), Expect = 1e-16
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 78 tttcttgcangttgtgcagttgttgtctcaagcttgctgcctccctttgc 127
||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 117 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgc 166
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 73.8 bits (37), Expect = 5e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 78 tttcttgcangttgtgcagttgttgtctcaagcttgctgcctcc 121
||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 115 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 69.9 bits (35), Expect = 8e-12
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 78 tttcttgcangttgtgcagttgttgtctcaagcttgctgcctccctttgc 127
||||||||| || ||||||||| || ||||||||||||||||||||||||
Sbjct: 123 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccctttgc 172
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 67.9 bits (34), Expect = 3e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 78 tttcttgcangttgtgcagttgttgtctcaagcttgctgcc 118
||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 189 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 65.9 bits (33), Expect = 1e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 66 cataccgataattttcttgcangttgtgcagttgttgtctcaagcttgctgcctcc 121
||||||||| || |||||||| ||| |||||||| || ||||||||||||||||||
Sbjct: 67 cataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 16 caagctagaggcagcaactgcatatcttgcaagaa 50
|||||| ||||||||||||||||| ||||||||||
Sbjct: 114 caagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 58.0 bits (29), Expect = 3e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 84 gcangttgtgcagttgttgtctcaagcttgctgcctccctttgc 127
||| ||| |||||||| || ||||||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgc 133
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 16 caagctagaggcagcaactgcatatcttgc 45
|||||| ||||||||||||||||| |||||
Sbjct: 119 caagcttgaggcagcaactgcataacttgc 90
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 58.0 bits (29), Expect = 3e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 80 tcttgcangttgtgcagttgttgtctcaagcttgctgcctccctttgc 127
||||||| ||| |||||||| || ||||||||| ||||||||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccctttgc 128
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 17 aagctagaggcagcaactgcatatcttgcaaga 49
||||| ||||||||||||||||| |||||||||
Sbjct: 113 aagcttgaggcagcaactgcataacttgcaaga 81
Score = 48.1 bits (24), Expect = 3e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 80 tcttgcangttgtgcagttgttgtctcaagcttgctgcc 118
||||||| | | ||||||||||||||| |||||||||||
Sbjct: 49 tcttgcatgctatgcagttgttgtctcgagcttgctgcc 11
