miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 77.8 bits (39), Expect = 7e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 217 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 259
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 125 tgttgttgctccctcccctgcactgcctcttccctggctcccc 167
Score = 67.9 bits (34), Expect = 7e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 8 ggagacagggatgaggcagagcatgggatgaggccatcaaca 49
|||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 15 ggagacagggatgaggcagagcatgggatggggctatcaaca 56
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 75.8 bits (38), Expect = 3e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 218 gttgttgcttcctcccctgcactgcctcttccctggctccccaccg 263
||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 126 gttgttgctccctcccctgcactgcctcttccctggctcctcaccg 171
Score = 48.1 bits (24), Expect = 6e-05
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 8 ggagacagggatgaggcagagcatggg-atgaggccatcaacaaaatt 54
||||||||||| ||||||||||||||| | | ||||||||||| ||||
Sbjct: 15 ggagacagggacgaggcagagcatgggtagggggccatcaacagaatt 62
Score = 48.1 bits (24), Expect = 6e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 88 atttctgtttgcttgctcacaaaacggaggga 119
||||||||||||| |||||||||| |||||||
Sbjct: 72 atttctgtttgctcgctcacaaaatggaggga 103
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 75.8 bits (38), Expect = 3e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaa 51
|||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 14 ttggagacagggatgaggcagagcatgggatggggctatcaacaaa 59
Score = 73.8 bits (37), Expect = 1e-12
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 217 tgttgttgcttcctcccctgcactgcctcttccctggctcc 257
|||||||||| ||||||||||||||||||||||||||||||
Sbjct: 127 tgttgttgctccctcccctgcactgcctcttccctggctcc 167
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 73.8 bits (37), Expect = 1e-12
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 217 tgttgttgcttcctcccctgcactgcctcttccctggctcc 257
|||||||||| ||||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcc 176
Score = 71.9 bits (36), Expect = 4e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaaat 53
||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct: 14 ttggagacagggatgagacagagaatgggatggggccatcaacaaaat 61
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 231 cccctgcactgcctcttccctggctc 256
||||||||||||||||||||||||||
Sbjct: 82 cccctgcactgcctcttccctggctc 107
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 231 cccctgcactgcctcttccctggct 255
|||||||||||||||||||||||||
Sbjct: 78 cccctgcactgcctcttccctggct 102
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 235 tgcactgcctcttccctggctccc 258
||||||||||||||||||||||||
Sbjct: 88 tgcactgcctcttccctggctccc 111
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 235 tgcactgcctcttccctggctc 256
||||||||||||||||||||||
Sbjct: 119 tgcactgcctcttccctggctc 140
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 235 tgcactgcctcttccctggctc 256
||||||||||||||||||||||
Sbjct: 88 tgcactgcctcttccctggctc 109
