miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 83.8 bits (42), Expect = 1e-15
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatggggccatcaacaaa 51
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 14 ttggagacagggatgaggcagagcatgggatggggctatcaacaaa 59
Score = 75.8 bits (38), Expect = 3e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 219 gtgttgttgcttcctcccctgcactgcctcttccctggctcc 260
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 126 gtgttgttgctccctcccctgcactgcctcttccctggctcc 167
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 79.8 bits (40), Expect = 2e-14
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatggggccatcaacaaaat 53
||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 14 ttggagacagggatgagacagagaatgggatggggccatcaacaaaat 61
Score = 75.8 bits (38), Expect = 3e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 219 gtgttgttgcttcctcccctgcactgcctcttccctggctcc 260
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 135 gtgttgttgctccctcccctgcactgcctcttccctggctcc 176
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 77.8 bits (39), Expect = 7e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 220 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 262
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 125 tgttgttgctccctcccctgcactgcctcttccctggctcccc 167
Score = 75.8 bits (38), Expect = 3e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 8 ggagacagggatgaggcagagcatgggatggggccatcaaca 49
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 15 ggagacagggatgaggcagagcatgggatggggctatcaaca 56
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 75.8 bits (38), Expect = 3e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 221 gttgttgcttcctcccctgcactgcctcttccctggctccccaccg 266
||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 126 gttgttgctccctcccctgcactgcctcttccctggctcctcaccg 171
Score = 56.0 bits (28), Expect = 3e-07
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 8 ggagacagggatgaggcagagcatggg-atggggccatcaacaaaatt 54
||||||||||| ||||||||||||||| | ||||||||||||| ||||
Sbjct: 15 ggagacagggacgaggcagagcatgggtagggggccatcaacagaatt 62
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 234 cccctgcactgcctcttccctggctc 259
||||||||||||||||||||||||||
Sbjct: 82 cccctgcactgcctcttccctggctc 107
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 234 cccctgcactgcctcttccctggct 258
|||||||||||||||||||||||||
Sbjct: 78 cccctgcactgcctcttccctggct 102
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggctccc 261
||||||||||||||||||||||||
Sbjct: 88 tgcactgcctcttccctggctccc 111
