miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;ABEP02005607.1/34557-34626 7739:Branchiostoma
floridae (Florida lancelet)
Length = 70
Score = 139 bits (70), Expect = 8e-33
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 14 tgccataaacccgtagatccgaacttgtgttgcttcagttcacaagctcgtgtctatggg 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgccataaacccgtagatccgaacttgtgttgcttcagttcacaagctcgtgtctatggg 60
Query: 74 tctatgtcat 83
||||||||||
Sbjct: 61 tctatgtcat 70
>RF00104;mir-10;BX284646.4/46761-46692 7955:Danio rerio
(zebrafish)
Length = 70
Score = 65.9 bits (33), Expect = 9e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 14 tgccataaacccgtagatccgaacttgtgttgcttcagttcacaagctcgtgtctat 70
||||| ||||||||||||||||||||||| || || || |||||||||||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtggtgtctctgtgcacaagctcgtgtctat 57
>RF00104;mir-10;AALT01443654.1/2056-2125 42254:Sorex araneus
(European shrew)
Length = 70
Score = 56.0 bits (28), Expect = 9e-08
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 14 tgccataaacccgtagatccgaacttgtgttgcttcagttcacaagctcgtgtctatggg 73
||||| ||||||||||||||||||||||| |||| | |||||||| |||||||| ||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtggtgctcttctgcacaagcttgtgtctatagg 60
Query: 74 tctatgtc 81
||| ||||
Sbjct: 61 tctgtgtc 68
>RF00104;mir-10;AAWZ01007717.1/44986-44914 28377:Anolis
carolinensis (green anole)
Length = 73
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tgccataaacccgtagatccgaacttg 40
|||||||||||||||||||||||||||
Sbjct: 1 tgccataaacccgtagatccgaacttg 27
>RF00104;mir-10;AAQA01000457.1/25556-25481 6279:Brugia malayi
Length = 76
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 aacccgtagatccgaacttgtgttg 45
|||||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgttg 32
>RF00104;mir-10;AAPE01049372.1/3456-3524 59463:Myotis lucifugus
(little brown bat)
Length = 69
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 tgccataaacccgtagatccgaacttgtg 42
||||| |||||||||||||||||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtg 29
>RF00104;mir-10;AANU01118946.1/11450-11381 9544:Macaca mulatta
(rhesus monkey)
Length = 70
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 tgccataaacccgtagatccgaacttgtg 42
||||| |||||||||||||||||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAHX01054266.1/78515-78584 10116:Rattus norvegicus
(Norway rat)
Length = 70
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 tgccataaacccgtagatccgaacttgtg 42
||||| |||||||||||||||||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABRQ01450213.1/964-1033 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 tgccataaacccgtagatccgaacttgtg 42
||||| |||||||||||||||||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAWZ01029956.1/4910-4979 28377:Anolis carolinensis
(green anole)
Length = 70
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 tgccataaacccgtagatccgaacttgtg 42
||||| |||||||||||||||||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABQF01045478.1/2452-2521 59729:Taeniopygia guttata
Length = 70
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 tgccataaacccgtagatccgaacttgtg 42
||||| |||||||||||||||||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtg 29
>RF00104;mir-10;AADN02042927.1/15251-15322 9031:Gallus gallus
(chicken)
Length = 72
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 cataaacccgtagatccgaacttgtgttg 45
||||||||||||||||||| |||||||||
Sbjct: 4 cataaacccgtagatccgatcttgtgttg 32
>RF00104;mir-10;BAAF04030492.1/777-846 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 tgccataaacccgtagatccgaacttgtg 42
||||| |||||||||||||||||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABIR01000029.1/41879-41953 6334:Trichinella
spiralis
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 aacccgtagatccgaacttgtgtt 44
||||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgtt 31
>RF00104;mir-10;CAAB01004143.1/16784-16858 31033:Takifugu rubripes
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 aacccgtagatccgaacttgtgtt 44
||||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgtt 31
>RF00104;mir-10;BAAF04027544.1/3636-3567 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 aaacccgtagatccgaacttgtgt 43
||||||||||||||||||||||||
Sbjct: 7 aaacccgtagatccgaacttgtgt 30
>RF00104;mir-10;BX663520.9/232508-232577 7955:Danio rerio
(zebrafish)
Length = 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 aaacccgtagatccgaacttgtg 42
|||||||||||||||||||||||
Sbjct: 7 aaacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAZO01005184.1/23040-23119 121224:Pediculus
humanus corporis (human body louse)
Length = 80
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 acccgtagatccgaacttgtgtt 44
|||||||||||||||||||||||
Sbjct: 9 acccgtagatccgaacttgtgtt 31
>RF00104;mir-10;AAAB01008964.1/2125227-2125303 180454:Anopheles
gambiae str. PEST
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 aaacccgtagatccgaacttgtg 42
|||||||||||||||||||||||
Sbjct: 7 aaacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABJB010963031.1/703-629 6945:Ixodes scapularis
(black-legged tick)
Length = 75
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 aacccgtagatccgaacttgtgt 43
|||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgt 30
>RF00104;mir-10;AAHY01129304.1/5145-5216 10090:Mus musculus (house
mouse)
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 cataaacccgtagatccgaacttgtg 42
||||||||||||||||||| ||||||
Sbjct: 4 cataaacccgtagatccgatcttgtg 29
>RF00104;mir-10;ABLF01019923.1/4047-3973 7029:Acyrthosiphon pisum
(pea aphid)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 acccgtagatccgaacttgtgt 43
||||||||||||||||||||||
Sbjct: 9 acccgtagatccgaacttgtgt 30
>RF00104;mir-10;AADG05003176.1/74572-74649 7460:Apis mellifera
(honey bee)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 aacccgtagatccgaacttgtg 42
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAWU01000325.1/1900-1975 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 aacccgtagatccgaacttgtg 42
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAGE02002929.1/307465-307539 7159:Aedes aegypti
(yellow fever mosquito)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 aacccgtagatccgaacttgtg 42
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAJJ01000960.1/12300-12233 7070:Tribolium
castaneum (red flour beetle)
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 aacccgtagatccgaacttgtg 42
||||||||||||||||||||||
Sbjct: 7 aacccgtagatccgaacttgtg 28
