miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;AAVX01020289.1/2798-2712 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 101 bits (51), Expect = 2e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 11 atgctgtgctaaagctggtacattggaaccaaatcaactcctcaatggatttggtcccct 70
||||| |||||||||||||| | |||||||||||||||| || ||||||||||||||||
Sbjct: 2 atgctttgctaaagctggtaaaatggaaccaaatcaactattctatggatttggtcccct 61
Query: 71 tcaaccagctgtagc 85
|||||||||||||||
Sbjct: 62 tcaaccagctgtagc 76
>RF00446;mir-133;AAQQ01431588.1/1752-1838 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 87
Score = 77.8 bits (39), Expect = 2e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 11 atgctgtgctaaagctggtacattggaaccaaatcaactcctcaatggatttggtcccct 70
||||| |||| |||||||| | |||||||||||| || |||| |||||||||||||||
Sbjct: 2 atgctttgctgaagctggtcaaatggaaccaaatcggctgctcactggatttggtcccct 61
Query: 71 tcaaccagctgtagc 85
|||||||||||||||
Sbjct: 62 tcaaccagctgtagc 76
>RF00446;mir-133;AAIY01559715.1/853-939 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 55 atggatttggtccccttcaaccagctgtagc 85
|||||||||||||||||||||||||||||||
Sbjct: 46 atggatttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAVX01266048.1/613-699 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 57 ggatttggtccccttcaaccagctgtagc 85
|||||||||||||||||||||||||||||
Sbjct: 48 ggatttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;ABKQ02016003.1/5336-5232 377270:Anopheles gambiae
S
Length = 105
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 54 aatggatttggtccccttcaaccagctgtagca 86
|||| ||||||||||||||||||||||||||||
Sbjct: 63 aatgcatttggtccccttcaaccagctgtagca 95
>RF00446;mir-133;AAGE02024522.1/50344-50238 7159:Aedes aegypti
(yellow fever mosquito)
Length = 107
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 atttggtccccttcaaccagctgtagca 86
||||||||||||||||||||||||||||
Sbjct: 70 atttggtccccttcaaccagctgtagca 97
>RF00446;mir-133;AAPP01015693.1/86515-86606 7217:Drosophila
ananassae
Length = 92
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 atttggtccccttcaaccagctgtagca 86
||||||||||||||||||||||||||||
Sbjct: 55 atttggtccccttcaaccagctgtagca 82
>RF00446;mir-133;AAQB01006401.1/332784-332872 7260:Drosophila
willistoni
Length = 89
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 atttggtccccttcaaccagctgtagca 86
||||||||||||||||||||||||||||
Sbjct: 52 atttggtccccttcaaccagctgtagca 79
>RF00446;mir-133;AAPT01020977.1/40333-40419 7222:Drosophila
grimshawi
Length = 87
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 atttggtccccttcaaccagctgtagca 86
||||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtagca 77
>RF00446;mir-133;AAPU01010689.1/170290-170375 7230:Drosophila
mojavensis
Length = 86
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 59 atttggtccccttcaaccagctgtagca 86
||||||||||||||||||||||||||||
Sbjct: 49 atttggtccccttcaaccagctgtagca 76
>RF00446;mir-133;AAGJ02035428.1/18887-18799
7668:Strongylocentrotus purpuratus
Length = 89
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 57 ggatttggtccccttcaaccagctgtagcattgca 91
||||||||||||||||||||||| |||||| ||||
Sbjct: 50 ggatttggtccccttcaaccagccgtagcactgca 84
>RF00446;mir-133;AAWZ01040028.1/1304-1218 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 56 tggatttggtccccttcaaccagctgt 82
|||||||||||||||||||||||||||
Sbjct: 47 tggatttggtccccttcaaccagctgt 73
>RF00446;mir-133;ABLF01021874.1/5675-5746 7029:Acyrthosiphon pisum
(pea aphid)
Length = 72
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 atttggtccccttcaaccagctgtagc 85
|||||||||||||||||||||||||||
Sbjct: 35 atttggtccccttcaaccagctgtagc 61
>RF00446;mir-133;AASW01052175.1/117-202 7240:Drosophila simulans
Length = 86
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 atttggtccccttcaaccagctgtagc 85
|||||||||||||||||||||||||||
Sbjct: 49 atttggtccccttcaaccagctgtagc 75
>RF00446;mir-133;AADN02043827.1/38919-38834 9031:Gallus gallus
(chicken)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 tggatttggtccccttcaaccagctg 81
||||||||||||||||||||||||||
Sbjct: 46 tggatttggtccccttcaaccagctg 71
>RF00446;mir-133;CAAE01007044.1/175-261 99883:Tetraodon
nigroviridis
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 56 tggatttggtccccttcaaccagctgtagcattg 89
||||||||||||||||||||||| || |||||||
Sbjct: 47 tggatttggtccccttcaaccagttgcagcattg 80
>RF00446;mir-133;AAZO01007144.1/88847-88936 121224:Pediculus
humanus corporis (human body louse)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 atttggtccccttcaaccagctgtag 84
||||||||||||||||||||||||||
Sbjct: 53 atttggtccccttcaaccagctgtag 78
>RF00446;mir-133;BABH01010529.1/47109-47021 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 atttggtccccttcaaccagctgtag 84
||||||||||||||||||||||||||
Sbjct: 52 atttggtccccttcaaccagctgtag 77
>RF00446;mir-133;AADG05005567.1/35761-35851 7460:Apis mellifera
(honey bee)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 atttggtccccttcaaccagctgtag 84
||||||||||||||||||||||||||
Sbjct: 54 atttggtccccttcaaccagctgtag 79
>RF00446;mir-133;AAFS01007554.1/884-971 46245:Drosophila
pseudoobscura pseudoobscura
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 atttggtccccttcaaccagctgta 83
|||||||||||||||||||||||||
Sbjct: 51 atttggtccccttcaaccagctgta 75
>RF00446;mir-133;AAWU01037751.1/37190-37294 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 atttggtccccttcaaccagctgt 82
||||||||||||||||||||||||
Sbjct: 71 atttggtccccttcaaccagctgt 94
>RF00446;mir-133;AAJJ01000046.1/77209-77292 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 atttggtccccttcaaccagctgt 82
||||||||||||||||||||||||
Sbjct: 47 atttggtccccttcaaccagctgt 70
>RF00446;mir-133;ABJB010482881.1/10984-10878 6945:Ixodes
scapularis (black-legged tick)
Length = 107
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 atttggtccccttcaaccagctgt 82
||||||||||||||||||||||||
Sbjct: 70 atttggtccccttcaaccagctgt 93
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 tttggtccccttcaaccagctgtagca 86
||||||||||||||||||||| |||||
Sbjct: 52 tttggtccccttcaaccagctatagca 78
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tttggtccccttcaaccagctg 81
||||||||||||||||||||||
Sbjct: 56 tttggtccccttcaaccagctg 77
