miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00672;mir-190;ABEP02029385.1/31054-30970 7739:Branchiostoma
floridae (Florida lancelet)
Length = 85
Score = 168 bits (85), Expect = 9e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 7 tgtggtgttctgggtgatatgtttgatatttggttgttaacttctatccaaccaatatat 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtggtgttctgggtgatatgtttgatatttggttgttaacttctatccaaccaatatat 60
Query: 67 caaacatatgatccaaggccccata 91
|||||||||||||||||||||||||
Sbjct: 61 caaacatatgatccaaggccccata 85
>RF00672;mir-190;AAHY01028992.1/83185-83270 10090:Mus musculus
(house mouse)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 14 ttctgggtgatatgtttgatatttggttgttaa 46
||||| ||||||||||||||||| |||||||||
Sbjct: 8 ttctgtgtgatatgtttgatattgggttgttaa 40
>RF00672;mir-190;AAPN01024655.1/497-583 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 15 tctgggtgatatgtttgatatttggttgtta 45
|||| ||||||||||||||||| ||||||||
Sbjct: 9 tctgtgtgatatgtttgatattaggttgtta 39
>RF00672;mir-190;AAFR03052180.1/90862-90947 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 14 ttctgggtgatatgtttgatatttggttgtt 44
||||| ||||||||||||||||| |||||||
Sbjct: 8 ttctgtgtgatatgtttgatattgggttgtt 38
>RF00672;mir-190;AAQQ01331788.1/1206-1291 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 14 ttctgggtgatatgtttgatatttggttgtt 44
||||| ||||||||||||||||| |||||||
Sbjct: 8 ttctgtgtgatatgtttgatattgggttgtt 38
>RF00672;mir-190;AAIY01445479.1/883-798 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 14 ttctgggtgatatgtttgatatttggttgtt 44
||||| ||||||||||||||||| |||||||
Sbjct: 8 ttctgtgtgatatgtttgatattgggttgtt 38
>RF00672;mir-190;AAGV020286131.1/1034-1117 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 15 tctgggtgatatgtttgatatttggttgtt 44
|||| ||||||||||||||||| |||||||
Sbjct: 9 tctgtgtgatatgtttgatattgggttgtt 38
>RF00672;mir-190;AAVX01176080.1/200-287 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 15 tctgggtgatatgtttgatatttggttgtt 44
|||| ||||||||||||||||| |||||||
Sbjct: 9 tctgtgtgatatgtttgatattaggttgtt 38
