miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00700;mir-375;ABEP02038283.1/5668-5595 7739:Branchiostoma
floridae (Florida lancelet)
Length = 74
Score = 147 bits (74), Expect = 3e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 16 agacaggccgagcctggcgagcaaagctgtgtctaaacttaacgttttgttcgttcggct 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agacaggccgagcctggcgagcaaagctgtgtctaaacttaacgttttgttcgttcggct 60
Query: 76 cgcgttatcttggc 89
||||||||||||||
Sbjct: 61 cgcgttatcttggc 74
>RF00700;mir-375;AADN02016765.1/7226-7294 9031:Gallus gallus
(chicken)
Length = 69
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 56 aacgttttgttcgttcggctcgcgtta 82
|||||||||||||||||||||||||||
Sbjct: 36 aacgttttgttcgttcggctcgcgtta 62
>RF00700;mir-375;CU929360.7/11656-11724 7955:Danio rerio
(zebrafish)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 gttttgttcgttcggctcgcgtta 82
||||||||||||||||||||||||
Sbjct: 39 gttttgttcgttcggctcgcgtta 62
>RF00700;mir-375;CU468956.14/114092-114163 7955:Danio rerio
(zebrafish)
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 gttttgttcgttcggctcgcgtta 82
||||||||||||||||||||||||
Sbjct: 42 gttttgttcgttcggctcgcgtta 65
>RF00700;mir-375;BAAF04058576.1/818-750 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 gttttgttcgttcggctcgcgtta 82
||||||||||||||||||||||||
Sbjct: 39 gttttgttcgttcggctcgcgtta 62
>RF00700;mir-375;AAGU02520619.1/1351-1284 9785:Loxodonta africana
(African savanna elephant)
Length = 68
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 cgttttgttcgttcggctcgcgt 80
|||||||||||||||||||||||
Sbjct: 37 cgttttgttcgttcggctcgcgt 59
