miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AABS01000138.1/97106-97190 7719:Ciona intestinalis
Length = 85
Score = 168 bits (85), Expect = 1e-41
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 11 atattatgaggtagtaggttatgcagttttgcgacattattctcgttgcgttggagataa 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atattatgaggtagtaggttatgcagttttgcgacattattctcgttgcgttggagataa 60
Query: 71 ctgtgtagcctactgactctaatgt 95
|||||||||||||||||||||||||
Sbjct: 61 ctgtgtagcctactgactctaatgt 85
>RF00027;let-7;AACT01017860.1/7776-7693 51511:Ciona savignyi
Length = 84
Score = 67.9 bits (34), Expect = 3e-11
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 16 atgaggtagtaggttatgcagttttgcgacattattctcgttgcgttggagataactgtg 75
|||||||||||||||||||||||| |||||| ||||| |||||| |||||||||||||
Sbjct: 6 atgaggtagtaggttatgcagtttggcgacaatattc-cgttgcaaaggagataactgtg 64
Query: 76 ta 77
||
Sbjct: 65 ta 66
>RF00027;let-7;AACT01017860.1/11076-10991 51511:Ciona savignyi
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 atgaggtagtaggttatgcagtttt 40
|||||||||||||||||||||||||
Sbjct: 6 atgaggtagtaggttatgcagtttt 30
>RF00027;let-7;AACT01004141.1/16436-16352 51511:Ciona savignyi
Length = 85
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 atgaggtagtaggttatgcagtttt 40
|||||||||||||||||||||||||
Sbjct: 6 atgaggtagtaggttatgcagtttt 30
>RF00027;let-7;AABS01000138.1/96188-96277 7719:Ciona intestinalis
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 atgaggtagtaggttatgcagtt 38
|||||||||||||||||||||||
Sbjct: 6 atgaggtagtaggttatgcagtt 28
