miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AABS01001128.1/11040-10976 7719:Ciona intestinalis
          Length = 65

 Score =  129 bits (65), Expect = 7e-30
 Identities = 65/65 (100%)
 Strand = Plus / Plus

                                                                      
Query: 11 cccttgtgcattgtagttgcattgcactgttgcattgtgggtaatgtgacaacaatacaa 70
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cccttgtgcattgtagttgcattgcactgttgcattgtgggtaatgtgacaacaatacaa 60

               
Query: 71 ccggg 75
          |||||
Sbjct: 61 ccggg 65




>RF00667;mir-33;AACT01006707.1/8663-8725 51511:Ciona savignyi
          Length = 63

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 gtgcattgtagttgcattgcactgt 40
          |||||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcactgt 30




>RF00667;mir-33;AAGE02018815.1/108790-108863 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 74

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 16 gtgcattgtagttgcattgcactgttgc 43
          ||||||||||||||||||||||| ||||
Sbjct: 6  gtgcattgtagttgcattgcacttttgc 33




>RF00667;mir-33;ABKP02018093.1/235-307 377271:Anopheles gambiae M
          Length = 73

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 gtgcattgtagttgcattgcact 38
          |||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcact 28




>RF00667;mir-33;AAPN01437665.1/3526-3458 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 69

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 gtgcattgtagttgcattgcac 37
          ||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcac 27




>RF00667;mir-33;ABQO010273055.1/1298-1232 9315:Macropus eugenii
          (tammar wallaby)
          Length = 67

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 gtgcattgtagttgcattgcac 37
          ||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcac 27




>RF00667;mir-33;AAIY01417522.1/685-752 9371:Echinops telfairi
          (small Madagascar hedgehog)
          Length = 68

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 gtgcattgtagttgcattgcac 37
          ||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcac 27




>RF00667;mir-33;CAAE01014738.1/1624047-1623979 99883:Tetraodon
          nigroviridis
          Length = 69

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 gtgcattgtagttgcattgcac 37
          ||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcac 27




>RF00667;mir-33;CAAB01001000.1/62134-62064 31033:Takifugu rubripes
          Length = 71

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 gtgcattgtagttgcattgcac 37
          ||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcac 27




>RF00667;mir-33;AADK01019309.1/4596-4529 7091:Bombyx mori
          (domestic silkworm)
          Length = 68

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 gtgcattgtagttgcattgcac 37
          ||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcac 27




>RF00667;mir-33;AADG05009493.1/1176-1111 7460:Apis mellifera
          (honey bee)
          Length = 66

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 tgtgcattgtagttgcattgca 36
          ||||||||||||||||||||||
Sbjct: 5  tgtgcattgtagttgcattgca 26




>RF00667;mir-33;AAWU01038467.1/41288-41214 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 75

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 gtgcattgtagttgcattgcac 37
          ||||||||||||||||||||||
Sbjct: 6  gtgcattgtagttgcattgcac 27