miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00982;mir-200;AABS01001272.1/8331-8416 7719:Ciona intestinalis
Length = 86
Score = 119 bits (60), Expect = 4e-27
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtattagacacacaatgctccgatactacgtggttggtgattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 atcaccattaccaggcagtattagacacacaatgctccgatactacgtggttggtgattc 13
>RF00241;mir-8;AAPN01278105.1/215-140 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 46.1 bits (23), Expect = 4e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtattagacacaca 31
|||| |||||||||||||||||||| |||||
Sbjct: 69 atcatcattaccaggcagtattagaaacaca 39
>RF00241;mir-8;ABQF01059078.1/1300-1375 59729:Taeniopygia guttata
Length = 76
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtattaga 25
|||| ||||||||||||||||||||
Sbjct: 69 atcatcattaccaggcagtattaga 45
>RF00241;mir-8;AADN02040853.1/30123-30198 9031:Gallus gallus
(chicken)
Length = 76
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtattaga 25
|||| ||||||||||||||||||||
Sbjct: 69 atcatcattaccaggcagtattaga 45
>RF00241;mir-8;CR925720.9/83468-83543 7955:Danio rerio (zebrafish)
Length = 76
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtattaga 25
|||| ||||||||||||||||||||
Sbjct: 69 atcatcattaccaggcagtattaga 45
>RF00241;mir-8;BAAE01261092.1/748-823 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtattaga 25
|||| ||||||||||||||||||||
Sbjct: 69 atcatcattaccaggcagtattaga 45
>RF00241;mir-8;AAVX01012727.1/1238-1163 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 atcaccattaccaggcagtattaga 25
|||| ||||||||||||||||||||
Sbjct: 69 atcatcattaccaggcagtattaga 45
