miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01058;MIR806;ABXC01001640.1/20344-20113 4558:Sorghum bicolor
(sorghum)
Length = 232
Score = 123 bits (62), Expect = 1e-27
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 171 tttgaataagacggatggtcaaataagatgtctgaaattctaaaacgacactctttttaa 230
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tttgaataagacgaatggtcaaataagatgtctgaaattctaaaacgacactctttttgg 218
Query: 231 gacggagggagtat 244
||||||||||||||
Sbjct: 219 gacggagggagtat 232
Score = 79.8 bits (40), Expect = 2e-14
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 9 ctccgtccggaaaaaagtgacgtttttgacttttagacatcgtgtttgactgttcgtttt 68
|||||||| |||| |||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct: 8 ctccgtcccaaaaagagtgacgtttttgactttgagacatcgtgtttgaccgttcgtctt 67
Query: 69 attc 72
||||
Sbjct: 68 attc 71
Score = 67.9 bits (34), Expect = 6e-11
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 171 tttgaataagacggatggtcaaataagatgtctgaaattctaaaacgacactctttttaa 230
||||||||||||| | ||||||| | ||||||| ||| || |||||| ||||||||||
Sbjct: 74 tttgaataagacgaacggtcaaacacgatgtctcaaagtcaaaaacgtcactctttttgg 15
Query: 231 gacggagggagtat 244
||||||||||||||
Sbjct: 14 gacggagggagtat 1
>RF01058;MIR806;ABXC01000117.1/227422-227180 4558:Sorghum bicolor
(sorghum)
Length = 243
Score = 113 bits (57), Expect = 1e-24
Identities = 69/73 (94%)
Strand = Plus / Minus
Query: 171 tttgaataagacggatggtcaaataagatgtctgaaattctaaaacgacactctttttaa 230
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 tttgaataagacgaatgatcaaataagatgtctgaaattctaaaacgacactctttttgg 15
Query: 231 gacggagggagta 243
|||||||||||||
Sbjct: 14 gacggagggagta 2
Score = 79.8 bits (40), Expect = 2e-14
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 9 ctccgtccggaaaaaagtgacgtttttgacttttagacatcgtgtttgactgttcgtttt 68
|||||||| |||| |||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct: 236 ctccgtcccaaaaagagtgacgtttttgactttgagacatcgtgtttgaccgttcgtctt 177
Query: 69 attc 72
||||
Sbjct: 176 attc 173
Score = 65.9 bits (33), Expect = 3e-10
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 171 tttgaataagacggatggtcaaataagatgtctgaaattctaaaacgacactctttttaa 230
||||||||||||| | ||||||| | ||||||| ||| || |||||| ||||||||||
Sbjct: 170 tttgaataagacgaacggtcaaacacgatgtctcaaagtcaaaaacgtcactctttttgg 229
Query: 231 gacggagggagta 243
|||||||||||||
Sbjct: 230 gacggagggagta 242
>RF01058;MIR806;ABXC01006731.1/44817-44575 4558:Sorghum bicolor
(sorghum)
Length = 243
Score = 113 bits (57), Expect = 1e-24
Identities = 69/73 (94%)
Strand = Plus / Minus
Query: 171 tttgaataagacggatggtcaaataagatgtctgaaattctaaaacgacactctttttaa 230
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 74 tttgaataagacgaatggtcaaataagatgtttgaaattctaaaacgacactctttttgg 15
Query: 231 gacggagggagta 243
|||||||||||||
Sbjct: 14 gacggagggagta 2
Score = 67.9 bits (34), Expect = 6e-11
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 19 aaaaaagtgacgtttttgacttttagacatcgtgtttgactgttcgttttattc 72
|||| ||| |||||||||||||| |||||||||||||||| |||||| ||||||
Sbjct: 226 aaaagagtaacgtttttgactttcagacatcgtgtttgaccgttcgtcttattc 173
Score = 58.0 bits (29), Expect = 6e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 171 tttgaataagacggatggtcaaataagatgtctgaaattctaaaacgacactctttttaa 230
||||||||||||| | ||||||| | ||||||||||| || |||||| |||||||||
Sbjct: 170 tttgaataagacgaacggtcaaacacgatgtctgaaagtcaaaaacgttactctttttgg 229
Query: 231 gacggagggagta 243
||||||||||||
Sbjct: 230 aacggagggagta 242
>RF01062;MIR812;ABXC01006731.1/44610-44782 4558:Sorghum bicolor
(sorghum)
Length = 173
Score = 61.9 bits (31), Expect = 4e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 171 tttgaataagacggatggtcaaataagatgtctgaaatt 209
||||||||||||| ||||||||||||||||| |||||||
Sbjct: 135 tttgaataagacgaatggtcaaataagatgtttgaaatt 173
Score = 48.1 bits (24), Expect = 6e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 37 acttttagacatcgtgtttgactgttcgttttattc 72
||||| |||||||||||||||| |||||| ||||||
Sbjct: 1 actttcagacatcgtgtttgaccgttcgtcttattc 36
>RF01058;MIR806;ABXC01001468.1/134421-134661 4558:Sorghum bicolor
(sorghum)
Length = 241
Score = 61.9 bits (31), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 175 aataagacggatggtcaaataagatgtctgaaattctaaaacgacactctttttaagacg 234
||||||||||||||||||||||||||||| || || | ||| || ||||||| |||||
Sbjct: 68 aataagacggatggtcaaataagatgtct--aagtcaacaacaacggtctttttgagacg 11
Query: 235 gagggagtat 244
||||||||||
Sbjct: 10 gagggagtat 1
>RF01062;MIR812;ABXC01001450.1/143874-143700 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 58.0 bits (29), Expect = 6e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 175 aataagacggatggtcaaataagatgtctgaaa 207
||||||||||||||||||| |||||||||||||
Sbjct: 140 aataagacggatggtcaaacaagatgtctgaaa 172
>RF01062;MIR812;ABXC01001731.1/110711-110869 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 171 tttgaataagacggatggtcaaataagatgtc 202
||||||||||||| ||||||||||||||||||
Sbjct: 128 tttgaataagacgaatggtcaaataagatgtc 159
>RF01062;MIR812;AAAA02017697.1/14921-14753 39946:Oryza sativa Indica
Group
Length = 169
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 171 tttgaataagacggatggtcaaataaga 198
||||||||||||| ||||||||||||||
Sbjct: 135 tttgaataagacgaatggtcaaataaga 162
>RF01062;MIR812;AC232899.1/162559-162387 4535:Oryza officinalis
Length = 173
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 171 tttgaataagacggatggtcaaa 193
|||||||||||||||||||||||
Sbjct: 39 tttgaataagacggatggtcaaa 17
>RF01062;MIR812;AAAA02025750.1/16980-17152 39946:Oryza sativa Indica
Group
Length = 173
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 171 tttgaataagacggatggtcaaa 193
|||||||||||||||||||||||
Sbjct: 39 tttgaataagacggatggtcaaa 17
>RF01058;MIR806;AAAA02025750.1/17185-16950 39946:Oryza sativa Indica
Group
Length = 236
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 171 tttgaataagacggatggtcaaa 193
|||||||||||||||||||||||
Sbjct: 168 tttgaataagacggatggtcaaa 190
>RF01062;MIR812;AACV01006189.1/16353-16196 39947:Oryza sativa
Japonica Group
Length = 158
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 175 aataagacggatggtcaaataa 196
||||||||||||||||||||||
Sbjct: 29 aataagacggatggtcaaataa 8
>RF01058;MIR806;AAAA02035414.1/13334-13081 39946:Oryza sativa Indica
Group
Length = 254
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 51 tgtttgactgttcgttttattc 72
||||||||||||||||||||||
Sbjct: 206 tgtttgactgttcgttttattc 185
>RF01058;MIR806;AP003898.3/118482-118242 39947:Oryza sativa
Japonica Group
Length = 241
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 tgtttgactgttcgttttattc 72
||||||||||||||||||||||
Sbjct: 49 tgtttgactgttcgttttattc 70
>RF01058;MIR806;AAAA02035821.1/1800-2043 39946:Oryza sativa Indica
Group
Length = 244
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 tgtttgactgttcgttttattc 72
||||||||||||||||||||||
Sbjct: 49 tgtttgactgttcgttttattc 70
>RF01058;MIR806;AP008218.1/27507873-27508120 39947:Oryza sativa
Japonica Group
Length = 248
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 51 tgtttgactgttcgttttattc 72
||||||||||||||||||||||
Sbjct: 201 tgtttgactgttcgttttattc 180
>RF01058;MIR806;AC092390.3/113010-113249 4530:Oryza sativa (rice)
Length = 240
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 174 gaataagacggatggtcaaata 195
||||||||||||||||||||||
Sbjct: 172 gaataagacggatggtcaaata 193
>RF01058;MIR806;AAAA02035612.1/21080-21314 39946:Oryza sativa Indica
Group
Length = 235
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 51 tgtttgactgttcgttttattc 72
||||||||||||||||||||||
Sbjct: 187 tgtttgactgttcgttttattc 166
>RF01058;MIR806;AP004324.2/47635-47401 39947:Oryza sativa Japonica
Group
Length = 235
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 tgtttgactgttcgttttattc 72
||||||||||||||||||||||
Sbjct: 47 tgtttgactgttcgttttattc 68
