miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 147 bits (74), Expect = 3e-35
Identities = 81/82 (98%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 18 gggctcgcttgg-gcagatcgggacccgccgcccggccgacgggacggatcccgccttgc 76
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gggctcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgc 74
Query: 77 accaagtgaatcggagccggcg 98
||||||||||||||||||||||
Sbjct: 75 accaagtgaatcggagccggcg 96
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa
Japonica Group
Length = 104
Score = 87.7 bits (44), Expect = 3e-17
Identities = 77/84 (91%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 18 gggctcgcttgg-gcagatcgggacccgccgcc-cggccgacgggac-ggatcccgcctt 74
|||||||||||| |||||||||||||||||||| | || | |||| | ||||||||||||
Sbjct: 15 gggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgcctt 74
Query: 75 gcaccaagtgaatcggagccggcg 98
||||||||||||||||||||||||
Sbjct: 75 gcaccaagtgaatcggagccggcg 98
>RF00677;MIR168;ABXC01002411.1/32850-32747 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 83.8 bits (42), Expect = 4e-16
Identities = 79/89 (88%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 18 gggctcgcttgg-gcagatcgggacccgccgcccggcc--gacgggacggatcccgcctt 74
|||||||||||| ||||||||||||| |||||| || |||||||| |||||||||||
Sbjct: 15 gggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgcctt 74
Query: 75 gcaccaagtgaatcggagccggcgcagcc 103
|||||||||||||| ||||||| ||||||
Sbjct: 75 gcaccaagtgaatccgagccggagcagcc 103
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggagcc 94
||||||||||||||| ||| ||||||||||||
Sbjct: 96 ggatcccgccttgcatcaactgaatcggagcc 127
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggagcc 94
||||||||||||||| ||| ||||||||||||
Sbjct: 96 ggatcccgccttgcatcaactgaatcggagcc 127
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggagcc 94
||||||||||||||| ||| ||||||||||||
Sbjct: 97 ggatcccgccttgcatcaactgaatcggagcc 128
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggagcc 94
||||||||||||||| ||| ||||||||||||
Sbjct: 94 ggatcccgccttgcatcaactgaatcggagcc 125
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 62 cggatcccgccttgcaccaagtgaatcggag 92
|||||||||||||||| ||| ||||||||||
Sbjct: 94 cggatcccgccttgcatcaactgaatcggag 124
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 64 gatcccgccttgcaccaagtgaatcggagccggcg 98
|||||||||||||| ||| |||||||||| |||||
Sbjct: 107 gatcccgccttgcatcaactgaatcggagacggcg 141
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggag 92
||||||||||||||| ||| ||||||||||
Sbjct: 35 ggatcccgccttgcatcaactgaatcggag 64
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggag 92
||||||||||||||| ||| ||||||||||
Sbjct: 94 ggatcccgccttgcatcaaatgaatcggag 123
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggag 92
||||||||||||||| ||| ||||||||||
Sbjct: 138 ggatcccgccttgcatcaactgaatcggag 167
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggag 92
||||||||||||||| ||| ||||||||||
Sbjct: 114 ggatcccgccttgcatcaactgaatcggag 143
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcaccaagtgaatcggag 92
||||||||||||||| ||| ||||||||||
Sbjct: 80 ggatcccgccttgcatcaactgaatcggag 109
