miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium
piliferum
Length = 135
Score = 56.0 bits (28), Expect = 1e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 12 atactcccttcgtcctaaaatatttgtcagagatttgtctaaagaagtatgtatctaaac 71
||||||||| ||||| ||||| |||||| ||||||||||||| | | ||||||||| |
Sbjct: 4 atactccctccgtcccaaaattcttgtcatagatttgtctaaatacggatgtatctagtc 63
Query: 72 atgtttta 79
||||||||
Sbjct: 64 atgtttta 71
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 83 ctagatacatctattttttgacaaatctctgacaagtattttaggacggagggagt 138
||||||||||| | ||| ||||||||| ||||||| ||||| |||||||||||||
Sbjct: 61 ctagatacatccgtatttagacaaatctatgacaagaattttgggacggagggagt 6
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 54.0 bits (27), Expect = 5e-07
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 60 atgtatctaaacatgttttaactctagatacatctattttttgacaaatctctgacaagt 119
||||||||| |||| ||||| ||||||||||||| ||||| | || | ||||||||
Sbjct: 52 atgtatctagacatattttagttctagatacatctctttttagtcactttgatgacaagt 111
Query: 120 attttaggacggagggagt 138
||||| |||||||||||||
Sbjct: 112 attttcggacggagggagt 130
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 84 tagatacatctattttttgacaaatctctgacaagtattttaggacggagggagt 138
|||||||||| |||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 77 tagatacatcaatttctagacaaagctaagacaagaattttaggacggagggagt 131
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 84 tagatacatctattttttgacaaatctctgacaagtattttaggacggagggagt 138
|||||||||| |||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 60 tagatacatcaatttctagacaaagctaagacaagaattttaggacggagggagt 6
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 82 tctagatacatctattttttgacaaatctctgacaagtattttaggacggagggagt 138
|||||||||||| |||||| || |||| ||||||||||| ||||||||||||||
Sbjct: 62 tctagatacatccatttttatgcatttctccgacaagtatttcaggacggagggagt 6
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 102 gacaaatctctgacaagtattttaggacggagggagt 138
||||||||| |||||| |||||||||||||||||||
Sbjct: 42 gacaaatctaagacaagaattttaggacggagggagt 6
>RF01058;MIR806;AP008212.1/4197992-4197753 39947:Oryza sativa
Japonica Group
Length = 240
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 atactcccttcgtcctaaaatatttgtc 39
|||||||||||||||| |||||||||||
Sbjct: 1 atactcccttcgtccttaaatatttgtc 28
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 103/128 (80%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 12 atactcccttcgtcctaaaatatttgtcagagatttgtctaaagaagtatgtatctaaac 71
||||||||| ||| |||||| ||||| ||||||||||| | | | |||||||||| |
Sbjct: 4 atactccctctgtcataaaattcttgtcttagatttgtctagatatgaatgtatctaatc 63
Query: 72 atgttttaac-tctagatacatctattttttgacaaatctctgacaagtattttaggacg 130
| ||||| || | |||||||| | |||||| |||||| || |||||| ||||| ||||
Sbjct: 64 acgttttgacatttagatacaaccatttttagacaaacctaagacaagatttttaagacg 123
Query: 131 gagggagt 138
||||||||
Sbjct: 124 gagggagt 131
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 84 tagatacatctattttttgacaaatctctgacaagtattttaggacggagggagt 138
|||||||||| || | | ||||||||| |||||| ||||| |||||||||||||
Sbjct: 76 tagatacatccatatctagacaaatctaagacaagaattttgggacggagggagt 130
>RF00906;MIR1122;FJ427399.1/11963-11864 4571:Triticum turgidum
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 112 tgacaagtattttaggacggagggagt 138
||||||||||||| |||||||||||||
Sbjct: 32 tgacaagtattttcggacggagggagt 6
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 112 tgacaagtattttaggacggagggagt 138
||||||||||||| |||||||||||||
Sbjct: 84 tgacaagtattttcggacggagggagt 110
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 108 tctctgacaagtattttaggacggagggagt 138
|||| |||||||||||| |||||||||||||
Sbjct: 36 tctcagacaagtattttcggacggagggagt 6
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 112 tgacaagtattttaggacggagggagt 138
||||||||||||| |||||||||||||
Sbjct: 103 tgacaagtattttcggacggagggagt 129
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 112 tgacaagtattttaggacggagggagt 138
||||||||||||| |||||||||||||
Sbjct: 115 tgacaagtattttcggacggagggagt 141
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 112 tgacaagtattttaggacggagggagt 138
||||||||||||| |||||||||||||
Sbjct: 104 tgacaagtattttcggacggagggagt 130
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 112 tgacaagtattttaggacggagggagt 138
||||||||||||| |||||||||||||
Sbjct: 32 tgacaagtattttcggacggagggagt 6
>RF00906;MIR1122;CT009586.1/21808-21942 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 112 tgacaagtattttaggacggagggagt 138
||||||||||||| |||||||||||||
Sbjct: 104 tgacaagtattttcggacggagggagt 130
>RF00906;MIR1122;AAAA02013156.1/16499-16354 39946:Oryza sativa
Indica Group
Length = 146
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 13 tactcccttcgtcctaaaatatt 35
|||||||||||||||||||||||
Sbjct: 142 tactcccttcgtcctaaaatatt 120
>RF00906;MIR1122;AACV01009382.1/41558-41703 39947:Oryza sativa
Japonica Group
Length = 146
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 13 tactcccttcgtcctaaaatatt 35
|||||||||||||||||||||||
Sbjct: 142 tactcccttcgtcctaaaatatt 120
>RF00906;MIR1122;AP008213.1/24848104-24848218 39947:Oryza sativa
Japonica Group
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 atactcccttcgtcctaaaatat 34
|||||||||||||||||||||||
Sbjct: 4 atactcccttcgtcctaaaatat 26
>RF01058;MIR806;AAAA02035210.1/8142-8366 39946:Oryza sativa Indica
Group
Length = 225
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 atactcccttcgtcctaaaatatttg 37
|||||||||||||||| |||||||||
Sbjct: 1 atactcccttcgtccttaaatatttg 26
>RF00906;MIR1122;ABXC01002132.1/397783-397672 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atatactcccttcgtcctaaaa 31
||||||||||||||||||||||
Sbjct: 2 atatactcccttcgtcctaaaa 23
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 113 gacaagtattttaggacggagggagt 138
|||||||||||| |||||||||||||
Sbjct: 96 gacaagtattttcggacggagggagt 121
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 113 gacaagtattttaggacggagggagt 138
|||||||||||| |||||||||||||
Sbjct: 95 gacaagtattttgggacggagggagt 120
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 113 gacaagtattttaggacggagggagt 138
|||||||||||| |||||||||||||
Sbjct: 31 gacaagtattttgggacggagggagt 6
>RF00906;MIR1122;AAAA02012175.1/18488-18377 39946:Oryza sativa
Indica Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tatatactcccttcgtcctaaaatat 34
|||||||||||||||||| |||||||
Sbjct: 1 tatatactcccttcgtcccaaaatat 26
>RF00906;MIR1122;AL607005.3/74396-74290 39947:Oryza sativa Japonica
Group
Length = 107
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 9 tatatactcccttcgtcctaaaatat 34
|||||||||||||||||| |||||||
Sbjct: 107 tatatactcccttcgtcccaaaatat 82
