miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AP008208.1/309335-309214 39947:Oryza sativa
Japonica Group
Length = 122
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 263 ttttttgggacggagggagtagtag 287
|||||||||||||||||||||||||
Sbjct: 25 ttttttgggacggagggagtagtag 1
>RF00906;MIR1122;AP004851.3/37998-38119 39947:Oryza sativa Japonica
Group
Length = 122
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 263 ttttttgggacggagggagtagtag 287
|||||||||||||||||||||||||
Sbjct: 98 ttttttgggacggagggagtagtag 122
>RF00906;MIR1122;AC104429.2/50540-50620 39947:Oryza sativa Japonica
Group
Length = 81
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 263 ttttttgggacggagggagtagta 286
||||||||||||||||||||||||
Sbjct: 57 ttttttgggacggagggagtagta 80
>RF00906;MIR1122;AAAA02007985.1/61647-61567 39946:Oryza sativa
Indica Group
Length = 81
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 263 ttttttgggacggagggagtagta 286
||||||||||||||||||||||||
Sbjct: 25 ttttttgggacggagggagtagta 2
>RF00906;MIR1122;AP003046.2/109392-109265 39947:Oryza sativa
Japonica Group
Length = 128
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 263 ttttttgggacggagggagtagta 286
||||||||||||||||||||||||
Sbjct: 104 ttttttgggacggagggagtagta 127
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 265 ttttgggacggagggagtagtag 287
|||||||||||||||||||||||
Sbjct: 83 ttttgggacggagggagtagtag 105
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 265 ttttgggacggagggagtagtag 287
|||||||||||||||||||||||
Sbjct: 83 ttttgggacggagggagtagtag 105
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 265 ttttgggacggagggagtagtag 287
|||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtagtag 1
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 265 ttttgggacggagggagtagtag 287
|||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtagtag 1
>RF00906;MIR1122;AP006171.2/9738-9583 39947:Oryza sativa Japonica
Group
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 264 tttttgggacggagggagtagta 286
|||||||||||||||||||||||
Sbjct: 133 tttttgggacggagggagtagta 155
>RF00906;MIR1122;AAAA02007372.1/1076-1188 39946:Oryza sativa Indica
Group
Length = 113
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 263 ttttttgggacggagggagtagt 285
|||||||||||||||||||||||
Sbjct: 25 ttttttgggacggagggagtagt 3
>RF00906;MIR1122;AL831796.5/20323-20408 4530:Oryza sativa (rice)
Length = 86
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 265 ttttgggacggagggagtagtag 287
|||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtagtag 1
>RF00906;MIR1122;AAAA02017589.1/5254-5140 39946:Oryza sativa Indica
Group
Length = 115
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 263 ttttttgggacggagggagtagt 285
|||||||||||||||||||||||
Sbjct: 91 ttttttgggacggagggagtagt 113
