miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 81.8 bits (41), Expect = 2e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 34 tactccctccatcccaaattataaggcactccaagaatcttggaatgacttataatttga 93
|||||||||| | |||||||||||| || ||||| ||||||| ||||||||||||||||
Sbjct: 5 tactccctccgttccaaattataagtcattccaataatcttgtaatgacttataatttgg 64
Query: 94 gatggagggagta 106
|| ||||||||||
Sbjct: 65 gacggagggagta 77
Score = 73.8 bits (37), Expect = 5e-13
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 34 tactccctccatcccaaattataaggcactccaagaatcttggaatgacttataatttga 93
|||||||||| |||||||||||||| || | ||||| | ||||||||||||||||||||
Sbjct: 77 tactccctccgtcccaaattataagtcattacaagattattggaatgacttataatttgg 18
Query: 94 gatggagggagta 106
| ||||||||||
Sbjct: 17 aacggagggagta 5
>RF00906;MIR1122;ABXC01000088.1/175772-175619 4558:Sorghum bicolor
(sorghum)
Length = 154
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 33 atactccctccatcccaaattataag 58
||||||||||||||||||||||||||
Sbjct: 151 atactccctccatcccaaattataag 126
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 77 aatgacttataatttgagatggagggagta 106
|||| ||||||||||| |||||||||||||
Sbjct: 121 aatgtcttataatttgggatggagggagta 150
>RF00906;MIR1122;ABXC01000098.1/126393-126501 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 34 tactccctccatcccaaattataag 58
|||||||||||||||||||||||||
Sbjct: 105 tactccctccatcccaaattataag 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 77 aatgacttataatttgagatggagggagtaa 107
|||| ||||||||||| ||||||||||||||
Sbjct: 76 aatgtcttataatttgggatggagggagtaa 106
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 34 tactccctccatcccaaattat 55
||||||||||||||||||||||
Sbjct: 5 tactccctccatcccaaattat 26
>RF01058;MIR806;ABXC01007069.1/15131-14891 4558:Sorghum bicolor
(sorghum)
Length = 241
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 80 gacttataatttgagatggagggagtaa 107
|||||| |||||||||||||||||||||
Sbjct: 214 gacttacaatttgagatggagggagtaa 241
>RF00906;MIR1122;AACV01002938.1/10208-10316 39947:Oryza sativa
Japonica Group
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 34 tactccctccatcccaaattataa 57
||||||||||||||||||||||||
Sbjct: 105 tactccctccatcccaaattataa 82
>RF00906;MIR1122;EF577863.1/736-830 4532:Oryza australiensis
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 33 atactccctccatcccaaattataagg 59
||||||||||||||||||| |||||||
Sbjct: 92 atactccctccatcccaaaatataagg 66
>RF00906;MIR1122;ABXC01006238.1/21919-22080 4558:Sorghum bicolor
(sorghum)
Length = 162
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 33 atactccctccatcccaaattataag 58
||||||||||||| ||||||||||||
Sbjct: 159 atactccctccattccaaattataag 134
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 30 cacatactccctccatcccaaa 51
||||||||||||||||||||||
Sbjct: 105 cacatactccctccatcccaaa 84
>RF00906;MIR1122;AP008213.1/14562972-14563105 39947:Oryza sativa
Japonica Group
Length = 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 31 acatactccctccatcccaaattata 56
||||||||||||||||||||| ||||
Sbjct: 133 acatactccctccatcccaaaatata 108
>RF00906;MIR1122;AAAA02021292.1/4370-4241 39946:Oryza sativa
Indica Group
Length = 130
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 tactccctccatcccaaattataagg 59
|||||||||||||||||| |||||||
Sbjct: 5 tactccctccatcccaaactataagg 30
>RF00906;MIR1122;AP003948.2/13023-12867 39947:Oryza sativa
Japonica Group
Length = 157
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 tactccctccatcccaaattataagg 59
|||||||||||||||||| |||||||
Sbjct: 5 tactccctccatcccaaaatataagg 30
>RF00906;MIR1122;AACV01025370.1/11561-11672 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 30 cacatactccctccatcccaaa 51
||||||||||||||||||||||
Sbjct: 112 cacatactccctccatcccaaa 91
>RF00906;MIR1122;AAAA02021800.1/3616-3483 39946:Oryza sativa
Indica Group
Length = 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 31 acatactccctccatcccaaattata 56
||||||||||||||||||||| ||||
Sbjct: 2 acatactccctccatcccaaaatata 27
>RF00906;MIR1122;AC097627.1/66504-66615 4530:Oryza sativa (rice)
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 33 atactccctccatcccaaattataag 58
||||||||||||||||||| ||||||
Sbjct: 109 atactccctccatcccaaaatataag 84
>RF00906;MIR1122;AACV01024988.1/98-221 39947:Oryza sativa Japonica
Group
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 33 atactccctccatcccaaattataag 58
||||||||||||||||||| ||||||
Sbjct: 121 atactccctccatcccaaaatataag 96
>RF00906;MIR1122;AP008215.1/8288002-8287875 39947:Oryza sativa
Japonica Group
Length = 128
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 34 tactccctccatcccaaattataagg 59
|||||||||||||||||| |||||||
Sbjct: 124 tactccctccatcccaaaatataagg 99
>RF00906;MIR1122;ABRL01000314.1/119-8 65489:Oryza barthii
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 33 atactccctccatcccaaattataag 58
||||||||||||||||||| ||||||
Sbjct: 109 atactccctccatcccaaaatataag 84
>RF00906;MIR1122;AC105262.3/31526-31369 39947:Oryza sativa Japonica
Group
Length = 158
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 34 tactccctccatcccaaattataagg 59
|||||||||||||||||| |||||||
Sbjct: 154 tactccctccatcccaaaatataagg 129
>RF00906;MIR1122;AACV01001940.1/8575-8731 39947:Oryza sativa
Japonica Group
Length = 157
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 33 atactccctccatcccaaattataag 58
||||||||||||||||||| ||||||
Sbjct: 154 atactccctccatcccaaaatataag 129
>RF00906;MIR1122;AAAA02006989.1/4212-4341 39946:Oryza sativa Indica
Group
Length = 130
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 33 atactccctccatcccaaattataag 58
||||||||||||||||||| ||||||
Sbjct: 127 atactccctccatcccaaaatataag 102
>RF00906;MIR1122;AAAA02004484.1/27911-27847 39946:Oryza sativa
Indica Group
Length = 65
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 34 tactccctccatcccaaattataagg 59
|||||||||||||||||| |||||||
Sbjct: 61 tactccctccatcccaaaatataagg 36
>RF00906;MIR1122;AP005098.4/61806-61935 39947:Oryza sativa Japonica
Group
Length = 130
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 34 tactccctccatcccaaattataagg 59
|||||||||||||||||| |||||||
Sbjct: 126 tactccctccatcccaaactataagg 101
>RF00906;MIR1122;ABRL01002629.1/2739-2591 65489:Oryza barthii
Length = 149
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 34 tactccctccatcccaaattataagg 59
|||||||||||||||| |||||||||
Sbjct: 145 tactccctccatcccatattataagg 120
>RF00906;MIR1122;AL772423.4/33732-33621 4530:Oryza sativa (rice)
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 30 cacatactccctccatcccaaa 51
||||||||||||||||||||||
Sbjct: 112 cacatactccctccatcccaaa 91
>RF00906;MIR1122;AP003292.2/51709-51837 39947:Oryza sativa Japonica
Group
Length = 129
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 34 tactccctccatcccaaattataagg 59
|||||||||||||||| |||||||||
Sbjct: 125 tactccctccatcccatattataagg 100
>RF00906;MIR1122;AACV01018737.1/24214-24370 39947:Oryza sativa
Japonica Group
Length = 157
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 34 tactccctccatcccaaattataagg 59
|||||||||||||||||| |||||||
Sbjct: 153 tactccctccatcccaaaatataagg 128
