miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AACT01017860.1/7776-7693 51511:Ciona savignyi
Length = 84
Score = 159 bits (80), Expect = 8e-39
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 10 ataacatgaggtagtaggttatgcagtttggcgacaatatttcgttgcaaaggagataac 69
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ataacatgaggtagtaggttatgcagtttggcgacaatattccgttgcaaaggagataac 60
Query: 70 tgtgtaacttgctggctcttttat 93
||||||||||||||||||||||||
Sbjct: 61 tgtgtaacttgctggctcttttat 84
>RF00027;let-7;AABS01000138.1/97106-97190 7719:Ciona intestinalis
Length = 85
Score = 67.9 bits (34), Expect = 2e-11
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 15 atgaggtagtaggttatgcagtttggcgacaatatt-tcgttgcaaaggagataactgtg 73
|||||||||||||||||||||||| |||||| |||| ||||||| |||||||||||||
Sbjct: 6 atgaggtagtaggttatgcagttttgcgacattattctcgttgcgttggagataactgtg 65
Query: 74 ta 75
||
Sbjct: 66 ta 67
>RF00027;let-7;AACT01017860.1/11076-10991 51511:Ciona savignyi
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 atgaggtagtaggttatgcagttt 38
||||||||||||||||||||||||
Sbjct: 6 atgaggtagtaggttatgcagttt 29
>RF00027;let-7;AACT01004141.1/16436-16352 51511:Ciona savignyi
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 atgaggtagtaggttatgcagttt 38
||||||||||||||||||||||||
Sbjct: 6 atgaggtagtaggttatgcagttt 29
>RF00027;let-7;AABS01000138.1/96188-96277 7719:Ciona intestinalis
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 atgaggtagtaggttatgcagtt 37
|||||||||||||||||||||||
Sbjct: 6 atgaggtagtaggttatgcagtt 28
