miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;ABXC01005647.1/68869-69033 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 85.7 bits (43), Expect = 2e-16
Identities = 143/175 (81%), Gaps = 21/175 (12%)
Strand = Plus / Plus
Query: 19 caccacaagttggtgaagctgccagcatgatctgatggtggtatatatgaatatatgatg 78
||||||||||||||||||||||||||||||||||||| | | ||| |||||| |
Sbjct: 1 caccacaagttggtgaagctgccagcatgatctgatg----tctttat--atatattaa- 53
Query: 79 tctttacctctgatctctccctgactgtcacggatcgatgaatccagg-atgaggggagg 137
||||||||||| ||||||||||||| | |||||||||||| ||| ||||||||| |
Sbjct: 54 ---ttacctctgatttctccctgactgttatggatcgatgaattcagatatgaggggaag 110
Query: 138 gaa----------taatgagcatcaggtcatgctgtagtttcatctgctggtggg 182
||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 111 gaagaaagaggaataatgagcatcaggtcatgctgtagtttcatccgctggtggg 165
>RF00640;MIR167_1;CT828788.1/88-212 39946:Oryza sativa Indica
Group
Length = 125
Score = 73.8 bits (37), Expect = 8e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 19 caccacaagttggtgaagctgccagcatgatctgatg 55
|||||||||||||||||||||||||||||||||||||
Sbjct: 1 caccacaagttggtgaagctgccagcatgatctgatg 37
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 149 atcaggtcatgctgtagtttcatctgctggt 179
|||||||||||||||||||||||||||||||
Sbjct: 92 atcaggtcatgctgtagtttcatctgctggt 122
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 151 caggtcatgctgtagtttcatctgctggtgg 181
|||||||||||||||||||||||||||||||
Sbjct: 198 caggtcatgctgtagtttcatctgctggtgg 228
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 19 caccacaagttggtgaagctgccagcatgatctg 52
|||||| |||||||||||||||||||||||||||
Sbjct: 1 caccacgagttggtgaagctgccagcatgatctg 34
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 151 caggtcatgctgtagtttcatctgctggtgg 181
|||||||||||||||||||||||||||||||
Sbjct: 197 caggtcatgctgtagtttcatctgctggtgg 227
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 19 caccacaagttggtgaagctgccagcatgatctg 52
|||||| |||||||||||||||||||||||||||
Sbjct: 1 caccacgagttggtgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
Length = 118
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 caccacaagttggtgaagctgccagcatgatctgat 54
|||||||||| | |||||||||||||||||||||||
Sbjct: 1 caccacaagtggatgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;ABXC01000844.1/72139-72006 4558:Sorghum bicolor
(sorghum)
Length = 134
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctgatg 55
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgatg 37
>RF00640;MIR167_1;AP003800.3/19613-19499 39947:Oryza sativa
Japonica Group
Length = 115
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctgatg 55
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgatg 37
>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
(African rice)
Length = 87
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 ggtgaagctgccagcatgatctga 53
||||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatctga 35
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 19 caccacaagttggtgaagctgccagcatgatctga 53
|||||| ||| | ||||||||||||||||||||||
Sbjct: 1 caccactagtagttgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01002259.1/3174-3066 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctgat 54
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
Indica Group
Length = 129
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctgat 54
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctga 53
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 ggtgaagctgccagcatgatct 51
||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 ggtgaagctgccagcatgatct 51
||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01000326.1/41757-41921 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctga 53
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctga 53
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum
bicolor (sorghum)
Length = 113
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctga 53
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
