miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00982;mir-200;AACT01017089.1/11032-10948 51511:Ciona savignyi
Length = 85
Score = 151 bits (76), Expect = 2e-36
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 ggtcactgaagcatcaacccggtagtacgatatgtgagctgtataatactgcctggtaat 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6 ggtcactgaagcatcaacccggtagtacgatatgtgaactgtataatactgcctggtaat 65
Query: 61 gatgattcagtggcgtcgcg 80
||||||||||||||||||||
Sbjct: 66 gatgattcagtggcgtcgcg 85
>RF00241;mir-8;AADN02040853.1/30123-30198 9031:Gallus gallus
(chicken)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatgatt 67
||||||||||||||||||||||||
Sbjct: 47 taatactgcctggtaatgatgatt 70
>RF00241;mir-8;AAPN01278105.1/215-140 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatgat 66
|||||||||||||||||||||||
Sbjct: 47 taatactgcctggtaatgatgat 69
>RF00241;mir-8;ABQF01059078.1/1300-1375 59729:Taeniopygia guttata
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatgat 66
|||||||||||||||||||||||
Sbjct: 47 taatactgcctggtaatgatgat 69
>RF00241;mir-8;CR925720.9/83468-83543 7955:Danio rerio (zebrafish)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatgat 66
|||||||||||||||||||||||
Sbjct: 47 taatactgcctggtaatgatgat 69
>RF00241;mir-8;BAAE01261092.1/748-823 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatgat 66
|||||||||||||||||||||||
Sbjct: 47 taatactgcctggtaatgatgat 69
>RF00241;mir-8;AAVX01012727.1/1238-1163 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatgat 66
|||||||||||||||||||||||
Sbjct: 47 taatactgcctggtaatgatgat 69
>RF00241;mir-8;AAPE01343286.1/476-400 59463:Myotis lucifugus
(little brown bat)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatga 65
||||||||||||||||||||||
Sbjct: 48 taatactgcctggtaatgatga 69
>RF00241;mir-8;AAPY01315282.1/3050-2977 37347:Tupaia belangeri
(northern tree shrew)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatga 65
||||||||||||||||||||||
Sbjct: 46 taatactgcctggtaatgatga 67
>RF00241;mir-8;AAYZ01293785.1/5589-5517 9978:Ochotona princeps
(American pika)
Length = 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatga 65
||||||||||||||||||||||
Sbjct: 45 taatactgcctggtaatgatga 66
>RF00241;mir-8;ABRQ01306924.1/2734-2660 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taatactgcctggtaatgatga 65
||||||||||||||||||||||
Sbjct: 46 taatactgcctggtaatgatga 67
