miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00654;mir-216;AACT01058314.1/9825-9745 51511:Ciona savignyi
Length = 81
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 gtgacgcttgtcgtctaatctctgcaggcaactgtgatgtcatagtcacatatgtgtgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgacgcttgtcgtctaatctctgcaggcaactgtgatgtcatagtcacatatgtgtgca 60
Query: 61 gaggttggatgaaatgtagtc 81
|||||||||||||||||||||
Sbjct: 61 gaggttggatgaaatgtagtc 81
>RF00654;mir-216;BX321898.29/72434-72349 7955:Danio rerio
(zebrafish)
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 taatctctgcaggcaactgtgatgt 40
|||||||||||||||||||||||||
Sbjct: 16 taatctctgcaggcaactgtgatgt 40
>RF00654;mir-216;CAAB01000324.1/12433-12520 31033:Takifugu
rubripes
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 taatctctgcaggcaactgtgatg 39
||||||||||||||||||||||||
Sbjct: 16 taatctctgcaggcaactgtgatg 39
>RF00654;mir-216;AANH01005109.1/23387-23300 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 taatctctgcaggcaactgtgatg 39
||||||||||||||||||||||||
Sbjct: 16 taatctctgcaggcaactgtgatg 39
>RF00654;mir-216;BAAF04050285.1/958-872 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 taatctctgcaggcaactgtgatg 39
||||||||||||||||||||||||
Sbjct: 16 taatctctgcaggcaactgtgatg 39
>RF00654;mir-216;ABRQ01364800.1/1509-1421 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 aatctctgcaggcaactgtgatgtcat 43
||||||||||||||| |||||||||||
Sbjct: 17 aatctctgcaggcaaatgtgatgtcat 43
>RF00654;mir-216;AALT01617623.1/4047-4135 42254:Sorex araneus
(European shrew)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 aatctctgcaggcaactgtgatgtca 42
||||||||||||||| ||||||||||
Sbjct: 17 aatctctgcaggcaaatgtgatgtca 42
>RF00654;mir-216;BX284627.4/32714-32802 10090:Mus musculus (house
mouse)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 aatctctgcaggcaactgtgatgtca 42
||||||||||||||| ||||||||||
Sbjct: 17 aatctctgcaggcaaatgtgatgtca 42
>RF00654;mir-216;ABRO01106143.1/1589-1501 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 aatctctgcaggcaactgtgatgtca 42
||||||||||||||| ||||||||||
Sbjct: 17 aatctctgcaggcaaatgtgatgtca 42
>RF00654;mir-216;AAKN02040735.1/24209-24296 10141:Cavia porcellus
(domestic guinea pig)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 aatctctgcaggcaactgtgatgtca 42
||||||||||||||| ||||||||||
Sbjct: 17 aatctctgcaggcaaatgtgatgtca 42
>RF00654;mir-216;BAAF04071571.1/5040-4954 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 taatctctgcaggcaactgtga 37
||||||||||||||||||||||
Sbjct: 16 taatctctgcaggcaactgtga 37
>RF00654;mir-216;AAVX01147466.1/944-1031 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 taatctctgcaggcaactgtga 37
||||||||||||||||||||||
Sbjct: 16 taatctctgcaggcaactgtga 37
