miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 111 bits (56), Expect = 2e-24
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 12 tgggatgaggtagtaggttgtatagtttcagggtcacacccaaactgggagttaactgta 71
|||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| ||
Sbjct: 2 tgggatgaggtagtaggttgtatagttttagggtcacacccacactgggagataactata 61
Query: 72 caatctactctctttc 87
||||||||| ||||||
Sbjct: 62 caatctactgtctttc 77
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 85.7 bits (43), Expect = 1e-16
Identities = 72/79 (91%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 12 tgggatgaggtagtaggttgtatag-tttcagggtcacaccca-aactgggagttaactg 69
||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |||||
Sbjct: 2 tgggatgaggtagtaggttgtatagtttttagggtcacacccaccactgggagataacta 61
Query: 70 tacaatctactctctttcc 88
||||||||||| |||||||
Sbjct: 62 tacaatctactgtctttcc 80
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 75.8 bits (38), Expect = 1e-13
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 11 ctgggatgaggtagtaggttgtatagtttcagggtcacacccaaactgggagttaactgt 70
||||||||||||||||| ||||||||||| ||||||| |||| || |||| ||||| |
Sbjct: 1 ctgggatgaggtagtagattgtatagttttagggtcatacccggtcttggagataactat 60
Query: 71 acaatctactctctttcc 88
|||||||||| |||||||
Sbjct: 61 acaatctactgtctttcc 78
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 71.9 bits (36), Expect = 2e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 12 tgggatgaggtagtaggttgtatagtttcagggtcacacccaaactgggagttaactgta 71
|||||||||||||||||||||||||||| | ||||| |||| |||||||| ||||| |
Sbjct: 2 tgggatgaggtagtaggttgtatagttttacggtcatacccgcactgggagataactatt 61
Query: 72 caatctactctctttcccaa 91
|| ||||| ||||||||||
Sbjct: 62 aaacctactgtctttcccaa 81
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 65.9 bits (33), Expect = 9e-11
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 14 ggatgaggtagtaggttgtatagtttcagggtcacacccaaactgggagttaactgtaca 73
|||||||||||||| ||||||||||| ||||| | |||| | || |||| ||||| ||||
Sbjct: 4 ggatgaggtagtagattgtatagttttagggttataccccatcttggagataactataca 63
Query: 74 atctactctctttccca 90
|||||| |||||||||
Sbjct: 64 gtctactgtctttccca 80
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 65.9 bits (33), Expect = 9e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 12 tgggatgaggtagtaggttgtatagtttcagggtcacaccc 52
|||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 2 tgggatgaggtagtaggttgtatagttttagggttacaccc 42
>RF00027;let-7;CAAE01014729.1/11382-11302 99883:Tetraodon
nigroviridis
Length = 81
Score = 63.9 bits (32), Expect = 4e-10
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 12 tgggatgaggtagtaggttgtatagtttcagggtcacacccaaactgggagttaactgta 71
|||||||||||||||| ||||||||||| || ||||||| | ||||||| ||||| ||
Sbjct: 2 tgggatgaggtagtagtttgtatagttttgggatcacaccagatctgggagataactata 61
Query: 72 caatctactctctttc 87
|| |||||| ||||||
Sbjct: 62 cagtctactgtctttc 77
>RF00027;let-7;BAAF04080487.1/5225-5305 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 63.9 bits (32), Expect = 4e-10
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 12 tgggatgaggtagtaggttgtatagtttcagggtcacacccaaactgggagttaactgta 71
|||||||||||||||| ||||||||||| ||| ||||||| | ||||||| ||||| ||
Sbjct: 2 tgggatgaggtagtagtttgtatagttttaggatcacaccagatctgggagataactata 61
Query: 72 caatctactctctttc 87
|| ||||| ||||||
Sbjct: 62 cagcctactgtctttc 77
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 12 tgggatgaggtagtaggttgtatagtttcagggtca 47
|||| ||||||||||||||||||||||| |||||||
Sbjct: 2 tggggtgaggtagtaggttgtatagttttagggtca 37
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 gggatgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||||||
Sbjct: 3 gggatgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 12 tgggatgaggtagtaggttgtatagtttcaggg 44
|||| ||||||||||||||||||||||| ||||
Sbjct: 2 tggggtgaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtttcagggt 45
|||||||||||||||| ||||||||||||
Sbjct: 7 tgaggtagtaggttgtgtagtttcagggt 35
>RF00027;let-7;AAQA01000457.1/25368-25290 6279:Brugia malayi
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 gatgaggtagtaggttgtatagtt 38
||||||||||||||||||||||||
Sbjct: 5 gatgaggtagtaggttgtatagtt 28
>RF00027;let-7;AAPN01341034.1/3404-3318 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 13 gggatgaggtagtaggttgtatagtttcaggg 44
|||||||||||||||||||| | |||||||||
Sbjct: 3 gggatgaggtagtaggttgtgtggtttcaggg 34
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tgggatgaggtagtaggttgtatagttt 39
|||| |||||||||||||||||||||||
Sbjct: 2 tggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAPY01663784.1/776-859 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 14 ggatgaggtagtaggttgtatagtttcagggtcacaccca 53
|||| ||||||||| |||||||||| |||||||||||||
Sbjct: 4 ggataaggtagtagattgtatagttctagggtcacaccca 43
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tgggatgaggtagtaggttgtatagttt 39
|||| |||||||||||||||||||||||
Sbjct: 2 tggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tgggatgaggtagtaggttgtatagttt 39
|||| |||||||||||||||||||||||
Sbjct: 2 tggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
Length = 73
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagttt 28
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagttt 28
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagttt 28
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagttt 28
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
(zebrafish)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAF04002563.1/3069-3152 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 61 agttaactgtacaatctactctctttcccaa 91
|||||||| ||||||||||| ||||||||||
Sbjct: 54 agttaactatacaatctactgtctttcccaa 84
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagttt 39
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtt 38
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABLA01021413.1/563-640 51029:Heterodera glycines
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtt 38
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABKE01000556.1/121-205 54126:Pristionchus pacificus
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtt 38
||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtt 27
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtt 38
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtt 38
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtt 38
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtt 38
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaggtagtaggttgtatagtt 38
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
