miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaaccttcta 70
|||||||||||||||||||||| || |||||||| | |||||||||||||||||| |||
Sbjct: 7 tgaggtagtaggttgtatagttgagaattacacccccagagataactgtacaacctccta 66
Query: 71 gctttccc 78
||||||||
Sbjct: 67 gctttccc 74
>RF00027;let-7;BAAF04093499.1/4339-4264 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 6 cggggtgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaacc 65
|||| |||||||||||||||||| |||||| |||||||| |||| |||||||||||||
Sbjct: 2 cgggttgaggtagtaggttgtatggtttagaattacaccctgggagttaactgtacaacc 61
Query: 66 ttctagctttcc 77
||||||||||||
Sbjct: 62 ttctagctttcc 73
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 85.7 bits (43), Expect = 8e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaaccttcta 70
||||||||||||||||||||||||| |||||| | | ||||||||||||||| ||| |||
Sbjct: 7 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 66
Query: 71 gctttcc 77
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 85.7 bits (43), Expect = 8e-17
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 6 cggggtgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaacc 65
|||||||||||||||||||||||||||||| |||||| | |||| |||||||||| ||
Sbjct: 2 cggggtgaggtagtaggttgtatagtttagaattacatcgtgggagttaactgtacagcc 61
Query: 66 ttctagctttccccg 80
| |||||||||||||
Sbjct: 62 tcctagctttccccg 76
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 79.8 bits (40), Expect = 5e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaaccttcta 70
||||||||||||||||||||||||| || ||| | ||||||||||||||||||| |||
Sbjct: 7 tgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaacctccta 66
Query: 71 gctttccc 78
||||||||
Sbjct: 67 gctttccc 74
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaacctt 67
|||||||||||||||||||||||||||| |||||| ||||||| |||||||||||
Sbjct: 4 gggtgaggtagtaggttgtatagtttagagatacaccatgggagatagctgtacaacctc 63
Query: 68 ctagctttccc 78
|||||||||||
Sbjct: 64 ctagctttccc 74
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 73.8 bits (37), Expect = 3e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 5 tcggggtgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaac 64
||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||| |
Sbjct: 1 tcgggatgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagc 60
Query: 65 cttctagctttcc 77
|| ||||||||||
Sbjct: 61 ctcctagctttcc 73
>RF00027;let-7;AAPN01238922.1/186-111 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 6 cggggtgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaacc 65
|||| |||||||||||||||||| |||||| | ||||| |||| |||||||||||||
Sbjct: 2 cgggttgaggtagtaggttgtatggtttagagtcacaccccgggagttaactgtacaacc 61
Query: 66 ttctagctttcc 77
||||||||||||
Sbjct: 62 ttctagctttcc 73
>RF00027;let-7;AAWZ01007717.1/43277-43200 28377:Anolis
carolinensis (green anole)
Length = 78
Score = 69.9 bits (35), Expect = 5e-12
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagcattacacctac-ggagataactgtacaaccttct 69
|||||||||||||||||| |||||| || ||||| | ||||||||||||||| ||| ||
Sbjct: 7 tgaggtagtaggttgtatggtttagaataacaccatcaggagataactgtacagcctcct 66
Query: 70 agctttccccg 80
|||||||||||
Sbjct: 67 agctttccccg 77
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 63.9 bits (32), Expect = 3e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaaccttcta 70
|||||||||||||||||||||| || | ||||| ||||||||||||||| ||| |||
Sbjct: 7 tgaggtagtaggttgtatagttcagagtgacaccacaggagataactgtacagcctccta 66
Query: 71 gctttccc 78
||||||||
Sbjct: 67 gctttccc 74
>RF00027;let-7;BAAF04118326.1/6305-6226 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 48 ggagataactgtacaaccttctagctttccc 78
|||||||||||||||||||||||||||||||
Sbjct: 47 ggagataactgtacaaccttctagctttccc 77
>RF00027;let-7;BAAE01140498.1/764-841 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 46 acggagataactgtacaaccttctagctttccc 78
||||| |||||||||||||||||||||||||||
Sbjct: 45 acggaaataactgtacaaccttctagctttccc 77
>RF00027;let-7;BAAE01198743.1/2195-2119 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaaccttcta 70
||||||||| |||||||||||| || || ||||| |||||| |||||||||||| |||
Sbjct: 7 tgaggtagtgggttgtatagttgagaatgacaccccgggagatgactgtacaacctccta 66
Query: 71 gcttt 75
|||||
Sbjct: 67 gcttt 71
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 9 ggtgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaaccttc 68
|||||||||||||||||||||||| || | |||| | |||||||||||| |||||| |
Sbjct: 5 ggtgaggtagtaggttgtatagttgagaagtacatcattggagataactgtgcaacctgc 64
Query: 69 tagct 73
|||||
Sbjct: 65 tagct 69
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 ggtgaggtagtaggttgtatagtttag 35
|||||||||||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgtatagtttag 30
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 ggtgaggtagtaggttgtatagtttag 35
|||||||||||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgtatagtttag 30
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 ggggtgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||||||
Sbjct: 3 ggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 ggggtgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||||||
Sbjct: 3 ggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 ggggtgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||||||
Sbjct: 3 ggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 ggggtgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||||||
Sbjct: 3 ggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 ggggtgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||||||
Sbjct: 3 ggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtatagttt 33
||||||||||||||||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtatagttt 33
||||||||||||||||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAUQ01090552.1/622-543 408171:epibiont metagenome
Length = 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 aactgtacaaccttctagctttccc 78
|||||||||||||||||||||||||
Sbjct: 52 aactgtacaaccttctagctttccc 76
>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
Length = 73
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 ggtgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgtatagttt 28
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttag 35
|||||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtttag 30
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 ggtgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 ggtgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
(zebrafish)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 ggtgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 ggtgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 ggtgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 ggtgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 ggtgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 50.1 bits (25), Expect = 5e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 9 ggtgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaacc 65
|||||||||||||||||||||||| || | |||| | |||||| |||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttcagaagtacaacattggagatgactgtacaacc 61
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaaccttcta 70
|||||||||||||||||||||| || | || || |||||| |||||||| ||| |||
Sbjct: 7 tgaggtagtaggttgtatagttcagagtgacgccacaggagatgactgtacagcctccta 66
Query: 71 gctttccc 78
||||||||
Sbjct: 67 gctttccc 74
>RF00027;let-7;AAZX01015868.1/1070-988 7425:Nasonia vitripennis
(jewel wasp)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtatagt 31
||||||||||||||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtatagt 27
>RF00027;let-7;AADG05003176.1/75207-75290 7460:Apis mellifera
(honey bee)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gggtgaggtagtaggttgtatagt 31
||||||||||||||||||||||||
Sbjct: 4 gggtgaggtagtaggttgtatagt 27
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtt 32
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABLA01021413.1/563-640 51029:Heterodera glycines
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtt 32
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AAQA01000457.1/25368-25290 6279:Brugia malayi
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtt 32
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABKE01000556.1/121-205 54126:Pristionchus pacificus
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtt 32
||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtt 27
>RF00027;let-7;ABRO01282771.1/6704-6628 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 6 cggggtgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaacc 65
|||| |||||||| ||||||||||||| || | ||||| | |||||| ||| ||| ||
Sbjct: 2 cgggctgaggtaggaggttgtatagttgaggaagacacccaaggagatcactatacggcc 61
Query: 66 ttctagctttcccc 79
| ||||||||||||
Sbjct: 62 tcctagctttcccc 75
>RF00027;let-7;AAGW01230269.1/1770-1854 9986:Oryctolagus cuniculus
(rabbit)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 tcggggtgaggtagtaggttgt 26
||||||||||||||||||||||
Sbjct: 1 tcggggtgaggtagtaggttgt 22
>RF00027;let-7;ABRQ01276450.1/1153-1077 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 6 cggggtgaggtagtaggttgtatagtttagcattacacctacggagataactgtacaacc 65
|||| |||||||| ||||||||||||| || | ||||| | |||||| ||| ||| ||
Sbjct: 2 cgggctgaggtaggaggttgtatagttgaggaggacacccaaggagatcactatacggcc 61
Query: 66 ttctagctttcccc 79
| ||||||||||||
Sbjct: 62 tcctagctttcccc 75
