miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 79.8 bits (40), Expect = 6e-15
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 14 tgaggtagtagattgtatggttttagggtcacaccctcggttgggagataactatgcaat 73
||||||||||| |||||| ||||||||||||||||| | |||||||||||||| ||||
Sbjct: 7 tgaggtagtaggttgtatagttttagggtcacacccac-actgggagataactatacaat 65
Query: 74 ctactgtctttc 85
||||||||||||
Sbjct: 66 ctactgtctttc 77
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 77.8 bits (39), Expect = 2e-14
Identities = 67/74 (90%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 14 tgaggtagtagattgtatggttttagggtcacaccctcggt-tgggagataactatgcaa 72
|||||||||||||||||| |||||||||||| ||| |||| | |||||||||||| |||
Sbjct: 7 tgaggtagtagattgtatagttttagggtcatacc--cggtcttggagataactatacaa 64
Query: 73 tctactgtctttcc 86
||||||||||||||
Sbjct: 65 tctactgtctttcc 78
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 75.8 bits (38), Expect = 9e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 14 tgaggtagtagattgtatggtttt-agggtcacaccctcggttgggagataactatgcaa 72
||||||||||| |||||| ||||| |||||||||||| | |||||||||||||| |||
Sbjct: 7 tgaggtagtaggttgtatagtttttagggtcacacccaccactgggagataactatacaa 66
Query: 73 tctactgtctttcc 86
||||||||||||||
Sbjct: 67 tctactgtctttcc 80
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 63.9 bits (32), Expect = 3e-10
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 10 ggggtgaggtagtagattgtatggttttagggtcacaccctcggt-tgggagataactat 68
||||||||||||||| |||||| |||| ||||| | ||||| || || |||||||||||
Sbjct: 3 ggggtgaggtagtaggttgtatagtttgggggtcgctccctctgtctgtgagataactat 62
Query: 69 gcaatctactgtctttcccg 88
|| ||||||||||||||||
Sbjct: 63 acagtctactgtctttcccg 82
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 60.0 bits (30), Expect = 5e-09
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 14 tgaggtagtagattgtatggttttagggtcacaccctcggttgggagataactatgcaat 73
|||||||||||||||||| |||||||||| | |||| | | |||||||||||| || |
Sbjct: 7 tgaggtagtagattgtatagttttagggttataccc-catcttggagataactatacagt 65
Query: 74 ctactgtctttccc 87
||||||||||||||
Sbjct: 66 ctactgtctttccc 79
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 60.0 bits (30), Expect = 5e-09
Identities = 65/75 (86%), Gaps = 5/75 (6%)
Strand = Plus / Plus
Query: 14 tgaggtagtagattgtatggttttagggtcacaccct--cggttgggagataactatgca 71
||||||||||| |||||| |||||||||| ||||||| |||| |||||||||| ||
Sbjct: 7 tgaggtagtaggttgtatagttttagggttacacccttccggt---cagataactataca 63
Query: 72 atctactgtctttcc 86
|||||||||||||||
Sbjct: 64 atctactgtctttcc 78
>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 58 gagataactatgcaatctactgtctttcc 86
|||||||||||||||||||||||||||||
Sbjct: 50 gagataactatgcaatctactgtctttcc 78
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 10 ggggtgaggtagtagattgtatggttttagggtca 44
||||||||||||||| |||||| ||||||||||||
Sbjct: 3 ggggtgaggtagtaggttgtatagttttagggtca 37
>RF00027;let-7;AAPY01663784.1/776-859 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 16 aggtagtagattgtatggttttagggtcacaccc 49
|||||||||||||||| ||| |||||||||||||
Sbjct: 9 aggtagtagattgtatagttctagggtcacaccc 42
>RF00027;let-7;AANH01002639.1/21280-21198 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 gagataactatgcaatctactgtctttccc 87
||||||||||| ||||||||||||||||||
Sbjct: 52 gagataactatacaatctactgtctttccc 81
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 14 tgaggtagtagattgtatggttttagggtcacaccctcggttgggagataactatgcaat 73
||||||||||| |||||| |||||| ||||| |||| | | ||||||||||||| ||
Sbjct: 7 tgaggtagtaggttgtatagttttacggtcatacccgcact-gggagataactattaaac 65
Query: 74 ctactgtctttccc 87
||||||||||||||
Sbjct: 66 ctactgtctttccc 79
>RF00027;let-7;CR936540.12/43970-44052 7955:Danio rerio
(zebrafish)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 58 gagataactatgcaatctactgtctttcc 86
||||||||||| |||||||||||||||||
Sbjct: 52 gagataactatacaatctactgtctttcc 80
>RF00027;let-7;ABPM01013261.1/416-335 106582:Maylandia zebra
(zebra mbuna)
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 58 gagataactatgcaatctactgtctttcc 86
||||||||||| |||||||||||||||||
Sbjct: 51 gagataactatacaatctactgtctttcc 79
>RF00027;let-7;CR847944.11/44347-44429 7955:Danio rerio
(zebrafish)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 gagataactatgcaatctactgtctttc 85
||||||||||| ||||||||||||||||
Sbjct: 51 gagataactatacaatctactgtctttc 78
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 10 ggggtgaggtagtagattgtatggttttaggg 41
||||||||||||||| |||||| |||||||||
Sbjct: 3 ggggtgaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 gataactatgcaatctactgtctttcc 86
||||||||| |||||||||||||||||
Sbjct: 50 gataactatacaatctactgtctttcc 76
>RF00027;let-7;CAAE01014729.1/11382-11302 99883:Tetraodon
nigroviridis
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 55 tgggagataactatgcaatctactgtctttc 85
|||||||||||||| || |||||||||||||
Sbjct: 47 tgggagataactatacagtctactgtctttc 77
>RF00027;let-7;BAAF04080487.1/5225-5305 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 14 tgaggtagtagattgtatggttttagggtcacacc 48
||||||||||| |||||| |||||||| |||||||
Sbjct: 7 tgaggtagtagtttgtatagttttaggatcacacc 41
>RF00027;let-7;AAQR01020418.1/249-164 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 8 gcggggtgaggtagtagattgtatggttttaggg 41
||||||||||||||||| |||| |||||| ||||
Sbjct: 1 gcggggtgaggtagtaggttgtgtggtttcaggg 34
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 13 gtgaggtagtagattgtatggttttagggt 42
||||||||||||||||||| ||| ||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtagggt 35
>RF00027;let-7;BAAF04002563.1/3069-3152 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 taactatgcaatctactgtctttccc 87
||||||| ||||||||||||||||||
Sbjct: 57 taactatacaatctactgtctttccc 82
