miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 tgaggtgaggtagtaggttgtaaagttg 30
|||||||||||||||||||||| |||||
Sbjct: 2 tgaggtgaggtagtaggttgtatagttg 29
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagttgtagggt 36
||||||||||||||||||| |||| ||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttttagggt 35
>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 tgaggtgaggtagtaggttgtaaagtt 29
|||||||||||||||||||||| ||||
Sbjct: 2 tgaggtgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 gaggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||||| ||||
Sbjct: 3 gaggtgaggtagtaggttgtatagtt 28
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 gaggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||||| ||||
Sbjct: 3 gaggtgaggtagtaggttgtatagtt 28
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 gtgaggtagtaggttgtaaagttgtagggt 36
|||||||||||| ||||| |||||||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtagggt 35
>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 gaggtgaggtagtaggttgtaaagtt 29
||||||||||||||||||||| ||||
Sbjct: 3 gaggtgaggtagtaggttgtatagtt 28
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 ggtgaggtagtaggttgtaaagttgtaggg 35
||||||||||||||||||| |||| |||||
Sbjct: 5 ggtgaggtagtaggttgtatagttttaggg 34
