miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00642;mir-23;AAVX01114775.1/823-749 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 41 gagacaaaaatcacattgccagggattacc 70
|||| |||||||||||||||||||||||||
Sbjct: 38 gagataaaaatcacattgccagggattacc 67
>RF00642;mir-23;CT027840.6/2697-2774 7955:Danio rerio (zebrafish)
Length = 78
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 46 aaaaatcacattgccagggattacc 70
|||||||||||||||||||||||||
Sbjct: 46 aaaaatcacattgccagggattacc 70
>RF00642;mir-23;AADN02067827.1/5868-5942 9031:Gallus gallus
(chicken)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 aaaatcacattgccagggattacc 70
||||||||||||||||||||||||
Sbjct: 44 aaaatcacattgccagggattacc 67
>RF00642;mir-23;CAAB01001656.1/44110-44031 31033:Takifugu rubripes
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 acaaaaatcacattgccagggatt 67
||||||||||||||||||||||||
Sbjct: 46 acaaaaatcacattgccagggatt 69
>RF00642;mir-23;BAAE01089507.1/636-563 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 aaaatcacattgccagggattacc 70
||||||||||||||||||||||||
Sbjct: 43 aaaatcacattgccagggattacc 66
>RF00642;mir-23;AAVX01508943.1/286-212 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 aaaatcacattgccagggattacc 70
||||||||||||||||||||||||
Sbjct: 44 aaaatcacattgccagggattacc 67
>RF00642;mir-23;AANN01357153.1/1425-1351 9365:Erinaceus europaeus
(western European hedgehog)
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 aaatcacattgccagggattacc 70
|||||||||||||||||||||||
Sbjct: 45 aaatcacattgccagggattacc 67
>RF00642;mir-23;AAPY01550614.1/2244-2174 37347:Tupaia belangeri
(northern tree shrew)
Length = 71
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 aaatcacattgccagggattacc 70
|||||||||||||||||||||||
Sbjct: 41 aaatcacattgccagggattacc 63
>RF00642;mir-23;BAAF04082680.1/5350-5271 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 aaaaatcacattgccagggatt 67
||||||||||||||||||||||
Sbjct: 48 aaaaatcacattgccagggatt 69
>RF00642;mir-23;AAPN01322484.1/282-356 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 aaaatcacattgccagggatt 67
|||||||||||||||||||||
Sbjct: 44 aaaatcacattgccagggatt 64
>RF00642;mir-23;AAPN01152921.1/1403-1329 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 aaaaatcacattgccagggat 66
|||||||||||||||||||||
Sbjct: 43 aaaaatcacattgccagggat 63
>RF00642;mir-23;BX908735.10/1674-1753 7955:Danio rerio (zebrafish)
Length = 80
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 aaaatcacattgccagggatt 67
|||||||||||||||||||||
Sbjct: 49 aaaatcacattgccagggatt 69
>RF00642;mir-23;BX664751.9/59056-58982 7955:Danio rerio
(zebrafish)
Length = 75
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 aaaatcacattgccagggatt 67
|||||||||||||||||||||
Sbjct: 44 aaaatcacattgccagggatt 64
>RF00642;mir-23;AANH01003598.1/90472-90550 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 aaaatcacattgccagggatt 67
|||||||||||||||||||||
Sbjct: 48 aaaatcacattgccagggatt 68
